LOCUS       NM_001404469            3480 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus basic transcription factor 3-like 4 (Btf3l4),
            transcript variant 3, mRNA.
ACCESSION   NM_001404469
VERSION     NM_001404469.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3480)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   2  (bases 1 to 3480)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 3480)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL607070.19.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4412816.1,
                                           SRR17253011.6986217.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164143 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-443               AL607070.19        90848-91290         c
            444-509             AL607070.19        87560-87625         c
            510-623             AL607070.19        83142-83255         c
            624-825             AL607070.19        76178-76379         c
            826-885             AL607070.19        75227-75286         c
            886-3480            AL607070.19        71334-73928         c
FEATURES             Location/Qualifiers
     source          1..3480
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.64 cM"
     gene            1..3480
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="basic transcription factor 3-like 4"
                     /db_xref="GeneID:70533"
                     /db_xref="MGI:MGI:1915312"
     exon            1..443
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            444..509
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             456..932
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="isoform 1 is encoded by transcript variant 3;
                     transcription factor BTF3 homolog 4"
                     /codon_start=1
                     /product="transcription factor BTF3 homolog 4 isoform 1"
                     /protein_id="NP_001391398.1"
                     /db_xref="GeneID:70533"
                     /db_xref="MGI:MGI:1915312"
                     /translation="MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLK
                     KLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGIL
                     SQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN"
     exon            510..623
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            624..825
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            826..885
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            886..3480
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2580
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="major polyA site"
     regulatory      2991..2996
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3011
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="major polyA site"
     regulatory      3459..3464
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3480
                     /gene="Btf3l4"
                     /gene_synonym="4632412E09Rik; 5730434I03Rik"
                     /note="major polyA site"
ORIGIN      
        1 gttagatttc tgtttgggat tccaaagaga ctcggtaagc ccgtttcgct gtgcacgcgt
       61 ctgtgtcttg caggcaagca ctttggagaa gcgctggacc cttcccccca cccccactcg
      121 cattcgcagg acttccactc aggcatgatg caaccaactg acataaggtc caagaaaacc
      181 atgcttgggg ccttttattg cacaactgaa gaggtagtcc gagggaactg ggacataagt
      241 catctcaagc acgtaaagtg taaagcttct ttccgttaag tctgttgctt tttgtattgg
      301 gtcgagttac tacctaacaa gtcaactgcc gactttccct cctgatgaga gtccattaga
      361 gctcaatgct tagtgaagga catccaaggt gtacaacccg aactagaccc cacaccaccc
      421 ttctgttaaa tccaagacaa aagatttgca acagcatgaa tcaagaaaag ttagccaaac
      481 ttcaagctca ggtccggata gggggcaagg gtacagctcg caggaagaag aaggtggtac
      541 ataggacagc tactgctgat gacaaaaagc ttcagagttc actaaagaaa ctggctgtga
      601 acaatatagc tggtattgaa gaggtgaata tgattaaaga cgatggcacg gttattcatt
      661 tcaacaatcc caaagtccaa gcttccctct ccgctaacac ctttgcaatt actggtcatg
      721 cagaagccaa accaatcaca gaaatgcttc ctgggatatt aagtcagctt ggtgctgaca
      781 gcttaacgag ccttagaaag ttagctgaac agttcccacg gcaagtattg gatagtaaag
      841 cgcccaaacc agaagacatc gatgaagagg atgatgatgt tccagatctt gtagaaaatt
      901 ttgatgaagc atcgaaaaat gaagctaact aaaatcctct gggttttgga agctggcatg
      961 gactagattt aacaatcagc tctgttgttc caaagtttta cagacatgga gaacacacct
     1021 gttattagtt cagtaatata aatattttgt atattaatga tgctgtctgc tcagcagttc
     1081 tcggtcattt gattttgcat tttgcacttc ttcccaggat ctatcttccc aggatctgtt
     1141 cttttggtca aaatatgaag tattggtaca gtttgagggt ggtttttgtt tttttggggg
     1201 gtggaacttt tggtgtgtat gtatatgtat gtgtgtgggt atgtgtgtac acagtggaca
     1261 gcagattgga taacagttat atcttcctat tccttcctcc aatagaaata aagcaaatct
     1321 ttacatttgt tacttttttt ttcctaacaa atactgcaca taattgatga aaagtgagta
     1381 cctctgattg cagagctgag gcgagtcctt ccgttagaag cttggtgtta atttgttgaa
     1441 ttaactttaa tatttttata catttctctg gattgaaaat gtcctgaact attttgccac
     1501 cagattgctg cgagagtcac aagatgggcc tctttggtgt ggctacctta gactcacttc
     1561 ctaatcaggc ccatacaatg tcctttttta gctttcttcc tggtgccctg cctccccaca
     1621 tattggtctt taaatgaact ggtcagcctt tgatattact cttctctcct gcctagcttg
     1681 agacagaagt tctccatata gaattgagag agtgcctaat tcctcttttt gttcctcacc
     1741 tcgaggaaca atgccattgt caatgtttta ttcctttcac atttatagtt ggtagagttc
     1801 aaactggaat agctagcatg tgcttcctaa ttaactttat actcggctta tcctgtttcc
     1861 taggtgttct tggtagcagg tgcaggggtg cctctttttc agcaaagttg aacctgggaa
     1921 tgtccttttg aatgaaaaga acatgtaggc catattatct cctagcataa ataggcattc
     1981 tctgaaatgg tactggctgc aggagaattt cttcaggcag tttcctattc ttggccttga
     2041 ccttacctct gagtagatct aattgattgt agctgctctt aaccccctcc tgcatgctta
     2101 ggatagtgct tcgggggaac agtggtaaac acagtattta attgcttacc ttcttcccta
     2161 gaacttggag gtaagttata ttcattcact caggttttct tgctgttctg ataaaagctt
     2221 gtgttttgac atatcaacat ttattatagc caatatttta ggataagatc gaaagaatct
     2281 gttgttttct ggcccatcac caaactaact gcagcttaac cttgcagcat gccaactttt
     2341 gtttcaagct agatatcttt ccttgatact taagatgcaa gaccaacagc atattgagag
     2401 atttacagac atgaaggcaa atctcccgtg ttctttttca tccaaacatt ttcaacttat
     2461 tttataaatt tgttgatttt ttcccctgtt atgttttata tatatggacg taacaaaata
     2521 aataacagta ataaaataac agtacaaaag aggagatatt tcctctagtg cttctgttaa
     2581 ttgttgtctt ttctatttct ctattctcca tactaaatta attctcatgt gggcattgtt
     2641 taaaataatc tcatccattg ttaggtcaat atttgtagct ggtctactta cttcagaatt
     2701 tagtcgttcc tttgcctgtc caagcaaaag acagaagcag agagcagcgg gcaatgttgt
     2761 agatgaaaaa agagagtata tctagaactg agaaaatgtg tgtcctggtc cagattcagg
     2821 ctctctgttg ccatgttcac ccacatcacc cagtaaggtt catcatccat ccagtaaggt
     2881 acttctgcgt gtgagctttg ttctgctctc gcagctcaga atctcacctg ggaattctca
     2941 agaagggatt ttgtcatcta ttcaaggatg ttgttatttt tatcagtact aataaacttt
     3001 atatacatat acccctttgc attttgatca cattttagtt tctgagagta attctggtca
     3061 ttatctcctt ttatcctgct gtcagcagct ctctattctg gtcttccttt tgtataaagg
     3121 attcgaggag aggtgactcc gtgattaagg gtgcactgcc cttgtagaag acctgagctt
     3181 agtcccagca ccaatgtcag gtggcttaaa actgcctgca actcaagctc caggcgtctg
     3241 acatactctg ctggcttcct tggtaacttc acatacttta taataaaatt aaaagaagca
     3301 atattctttt tgtctcattt ctatactttc ccttttctga acaaaaatat tttgatatgt
     3361 tcaacaaaga attatgtttt caaggtaggt aggcatagaa taaaggtaaa acataggtga
     3421 aactttagta aactatatgg atcttggcat aaacatgaat taaatggtta tatttctaaa
//
