LOCUS       NM_201646               2075 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus BTB domain containing 6 (Btbd6), transcript variant 1,
            mRNA.
ACCESSION   NM_201646
VERSION     NM_201646.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY337984.1, AK146991.1, AA870939.1 and AI118479.1.
            
            On Mar 21, 2009 this sequence version replaced NM_201646.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031195.1, AK146991.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               BY337984.1         16-189
            175-1008            AK146991.1         7-840
            1009-1466           AA870939.1         79-536
            1467-2062           AK146991.1         1299-1894
            2063-2075           AI118479.1         1-13                c
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 61.5 cM"
     gene            1..2075
                     /gene="Btbd6"
                     /note="BTB domain containing 6"
                     /db_xref="GeneID:399566"
                     /db_xref="MGI:MGI:3026623"
     exon            1..420
                     /gene="Btbd6"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..1663
                     /gene="Btbd6"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; BTB/POZ domain-containing protein 6; BTB (POZ)
                     domain containing 6"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 6 isoform 1
                     precursor"
                     /protein_id="NP_964008.2"
                     /db_xref="CCDS:CCDS49193.1"
                     /db_xref="GeneID:399566"
                     /db_xref="MGI:MGI:3026623"
                     /translation="MLLPLACLHGRVAQCLTSLLVLAEPFPRPRRGAKARGAAPTSAE
                     PAPAVAKMAAELYPPASPSAATATDIANSNAAGAAESTKVGLCCPPCLAPAPLPPLPA
                     PPLPDNNNPESPNWQSFHPTLRERNALMFNNELMADVHFIVGALGAARRVPAHKYVLA
                     VGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLVLLKYMYSDEIDLEADTVLATLYAAK
                     KYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPELTQRCWEVIDAQAEMALRSE
                     GFCEIDRQTLEIIVTREALNTKEAVVFEAVLNWAEAECKRQGLPVTPHNKRHVLGRAL
                     YLVRIPTMTLEEFANGAAQSDILTLEETHNIFLWYTAAKKPLLDFPLTKRKGLAPQRC
                     HRFQSSAYRSNQWRYRGRCDSIQFAVDRRVFIAGLGLYGSSSGKAEYSVKIELKRLGM
                     VLAQNLTKFVSDGSSNTFPVWFEHPVQVEQDTFYTASAVLDGSELSYFGQEGMTEVQC
                     GKVAFQFQCSSDSTNGTGVQGGQIPELIFYA"
     exon            421..511
                     /gene="Btbd6"
                     /inference="alignment:Splign:2.1.0"
     exon            512..630
                     /gene="Btbd6"
                     /inference="alignment:Splign:2.1.0"
     exon            631..2067
                     /gene="Btbd6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2044..2049
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btbd6"
                     /note="hexamer: AATAAA"
     polyA_site      2067
                     /gene="Btbd6"
                     /note="major polyA site"
ORIGIN      
        1 gtgtggggtg cgggtgggta gcgggcaggg ccggcgtggc cccatgctgc tgccgctcgc
       61 ctgcctgcat gggcgggtgg cgcagtgcct aacctccctg ctggtgctcg cagagccgtt
      121 tcccaggccc cgtcgcggcg cgaaggcgcg cggcgcagca ccgaccagtg cggagcccgc
      181 cccggcagta gcgaagatgg ccgcggaact gtacccgccc gccagtccct ctgcagctac
      241 tgccaccgac atcgccaaca gcaacgcggc aggcgcagcc gagagcacga aggtcgggct
      301 ttgctgcccg ccctgcctgg cacccgcccc gctgccgccc ttgcccgcgc cgcccttgcc
      361 agacaacaac aatcccgaga gccccaactg gcagtccttc catcctacgc tgcgcgagag
      421 gaatgcgctc atgttcaaca acgagctgat ggctgacgtc cacttcatcg tgggggctct
      481 gggggctgcc aggcgtgtgc ccgcccacaa gtatgtcttg gctgtcggca gctccgtctt
      541 ctatgccatg ttctacgggg atcttgcgga agtgaagtca gaaatccaca ttcccgatgt
      601 ggagcctgct gccttcttgg tcttgctaaa gtacatgtac agcgatgaga tcgacctgga
      661 ggcggacaca gtgcttgcca ctctgtatgc tgctaagaag tacatcgtgc ctgccctggc
      721 caaggcctgc gtcaactttc tggaaacaag tctggaagcc aaaaatgctt gtgtcctgct
      781 gtcccagagc cgactgtttg aggagcctga actgacccag agatgctggg aagtcattga
      841 tgcacaagct gaaatggccc tgaggtctga aggcttctgt gaaattgacc ggcagacact
      901 ggagatcatt gtgaccaggg aggccctcaa taccaaggag gctgtggtct tcgaggccgt
      961 cctgaactgg gctgaggcag aatgtaagag acagggcctc ccagtcactc ctcacaacaa
     1021 gaggcatgtt ttgggaagag ccctctacct ggtccgaatt ccaactatga ccttagagga
     1081 gtttgccaat ggtgccgccc agtcagacat cctgacctta gaagagaccc acaacatctt
     1141 cctttggtac actgctgcca aaaagcccct ccttgacttc cccctgacca agaggaaggg
     1201 ccttgctcca caaaggtgcc accgcttcca gtcttctgcc taccgaagta accagtggag
     1261 gtaccgtgga cgctgtgaca gcatccagtt tgcagtggac agaagggtgt tcattgctgg
     1321 gctgggcttg tatgggtcca gctctgggaa ggctgagtac agcgtcaaga ttgaactcaa
     1381 gcggctaggg atggtcctgg ctcagaacct caccaagttt gtttcagacg gatccagcaa
     1441 cactttccca gtctggtttg agcacccggt ccaggtggag caggacacct tctacactgc
     1501 cagtgctgtc ctggacggca gtgagctcag ctactttggg caagaaggaa tgacagaggt
     1561 gcagtgtggg aaggtagcct tccagttcca gtgctcctca gacagtacca atgggactgg
     1621 agttcagggt ggacagattc cagagctcat cttctatgcc tgaggcgtaa ggttggagtg
     1681 gacttgccac caggctcttc ctccatagag tccacacagt aagtgcagtg gaggtgcagg
     1741 acacttccag ctgccttact gataccattc aaggcttggc tttctctatc agccagagtc
     1801 tgaaacttga cttctcacag cccgtgtccg ctgaccctag acagcattcc acaggtggaa
     1861 ggaagacttg ggtccaaggt cgtccccgat ccctgccagt gacacccaag cttcaggacc
     1921 cttggatttc cctccccctt tggattctaa gtgatttcag cctacgttga ggcctcccat
     1981 tcaagccaca aattgctgaa aagtcactta aaatagttcc atcctattta agtgaatttt
     2041 cgtaataaag gtttcacaga acaagaaaaa aaaaa
//
