LOCUS       NM_028055               2260 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus BTB domain containing 17 (Btbd17), mRNA.
ACCESSION   NM_028055 XM_484092
VERSION     NM_028055.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2260)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2260)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2260)
  AUTHORS   Loo,L., Simon,J.M., Xing,L., McCoy,E.S., Niehaus,J.K., Guo,J.,
            Anton,E.S. and Zylka,M.J.
  TITLE     Single-cell transcriptomic analysis of mouse neocortical
            development
  JOURNAL   Nat Commun 10 (1), 134 (2019)
   PUBMED   30635555
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2260)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL663079.9.
            
            On Oct 19, 2007 this sequence version replaced NM_028055.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032100.1, BC122876.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               AL663079.9         114931-115059       c
            130-406             AL663079.9         113017-113293       c
            407-2260            AL663079.9         109836-111689       c
FEATURES             Location/Qualifiers
     source          1..2260
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.54 cM"
     gene            1..2260
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /note="BTB domain containing 17"
                     /db_xref="GeneID:72014"
                     /db_xref="MGI:MGI:1919264"
     exon            1..129
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1481
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /note="BTB/POZ domain-containing protein 17; BTB (POZ)
                     domain containing 17"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 17 precursor"
                     /protein_id="NP_082331.1"
                     /db_xref="CCDS:CCDS25610.1"
                     /db_xref="GeneID:72014"
                     /db_xref="MGI:MGI:1919264"
                     /translation="MLRKGSCKPGSWGSFWAILALVGLVTRAAQRADVGGEAAGTAIN
                     HSHMLLQRLQDLLRQGNASDVILRVQAVGTDEVRAFHTHRLLLGLHSELFRELLSNQS
                     EVMLRESRDCAAVFDKFIRYLYCGELTVLLAQAIPLHRLATKYRVASLQRGVADYMRA
                     HLAGGVGPAVGWYHYAVSTGDEALRESCLQFLAWNLSAVAGSAEWGAVSPELLAQLLQ
                     RSDLVLQDELELFHALEAWLGRARPPPTVAERALRAIRYPMIPPAQLFQLQARSAALA
                     RHGPAVADLLLQAYQFHAASPLHYAKFFHVNGSAFLPRNYLAPAWGAPWVINNPARDD
                     RSTSFQTQLGPSGHDAGRRITWNVLFSPRWLPVSLRPVYADAAGTALPAARPEDGRPR
                     LVVTPASSGGDAAGVSFQKTVLVGARHQGRLLVRHAYSFHQSSEEAGDFLAHADLQRR
                     NSEYLVENALHLHLIVKPVYHTLIRTPS"
     exon            130..406
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /inference="alignment:Splign:2.1.0"
     exon            407..2260
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1675..1680
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /note="hexamer: AATAAA"
     polyA_site      1712
                     /gene="Btbd17"
                     /gene_synonym="1500005I02Rik; Tango10a"
                     /note="major polyA site"
ORIGIN      
        1 ggacttgact gtccctccag tggacttagg gacagagcac aaagatgctt agaaaaggtt
       61 cctgcaagcc tgggtcctgg ggcagcttct gggctattct ggccttggtg ggactggtca
      121 ctcgtgcagc tcagagagcc gatgtgggtg gggaggcagc aggcaccgcc atcaaccact
      181 cccacatgct gctccagcga ctgcaggacc tgctgcgcca gggcaatgcc agtgatgtca
      241 tcctgcgggt ccaggctgtg ggcaccgacg aggtccgagc cttccacacc catcgcctgt
      301 tgctggggct gcacagtgag ctgttccggg agctgctgag caaccagagt gaggttatgc
      361 tgcgggagtc ccgggactgt gctgctgtct ttgacaagtt catcaggtat ttgtactgtg
      421 gtgagctgac tgtactgctg gcccaggcta tcccgctgca caggctggcc accaagtacc
      481 gagtagcatc cttgcagcga ggcgtggccg actacatgcg cgcacacctg gcgggaggcg
      541 tgggccccgc tgtgggctgg taccactacg ctgttagcac cggggatgag gctctgcgcg
      601 agagctgcct gcagttcctg gcttggaacc tttctgccgt ggcggggagc gcggagtggg
      661 gagccgtgag ccccgagttg ctggcgcagc tcctgcagcg ctcggacctg gtgctgcagg
      721 atgagctgga gctgttccac gcgctggagg cgtggctggg ccgcgcgcgg ccgcccccca
      781 ccgtggccga gcgagcgctg cgcgccatcc gctacccgat gattccgcct gcacagcttt
      841 tccagctgca ggcgcgctcg gccgcgctgg cgcgccacgg cccggcggtg gcagatctct
      901 tgctgcaggc ttaccagttc cacgccgcct cgccgttgca ttacgccaag ttttttcacg
      961 tgaacggcag cgcctttctg ccgcgcaact acctcgcccc agcctggggc gccccgtggg
     1021 tcatcaacaa cccggctcgc gacgatcgca gcaccagttt ccagacgcag ttgggaccca
     1081 gtggtcatga cgcgggtcgc cggattacct ggaacgtgct cttctccccg cgctggctgc
     1141 ccgtcagctt gcggccggtc tacgcggacg ccgcgggcac cgcgctgcct gccgcgcgcc
     1201 ccgaggacgg gaggccgcga ctagtggtca cgccagctag cagcggtggc gatgcggcgg
     1261 gcgtgagctt ccagaagaca gtgctggtgg gtgcgcgcca tcagggccgc ctcctggtgc
     1321 gccacgccta cagcttccat caaagcagcg aagaagctgg cgacttcctg gcccacgcag
     1381 atctgcagag gcgcaactcg gaatacctgg tggagaatgc gctgcatctc catctcattg
     1441 tcaagccggt gtaccacacc ctcatccgga ctcccagtta acctctggat tgagaaataa
     1501 ggctaggcct ggatggcgca ccagggtgtc aaagtgactg ttggcccggg ccttgggtga
     1561 tcaggtgcag ccggttggga ctagggtgga aggcaggtga atgtggtaga caaaatggct
     1621 gtggtttcag gagtgccttc tccagctaat ttgaaggcag cattcttggt acagaataaa
     1681 ccgatgctca gaggggccag gtactgaagc aactcccggg tctcaaaaaa tgtctggggt
     1741 tcacataccc tccactagct cctccctgcc agacacccca cctggacatc aattagggcg
     1801 gggaagattg attgccaggg ctttggtcct ggcaatctcc ctcttggata ggaacttcca
     1861 catttgagcc gaggtgctct ctgagctgca gtctccaggg ggcagcagcc cctgtggctt
     1921 gtgggacatt ctgccactgc ccttcaagtc cctggcctta gtgaagggtc cagggtagtg
     1981 gaaaggtctt gagagagggc ggaaaactag acctagctct agccccattt ttttctggag
     2041 agggagagtc ttggcaactt gaagaaaaaa cattccccag ttgtgtgtag gtttgggcca
     2101 tgggagatga ggctctggga gagaaagggc caggatctgg accagtctga gtccccacgc
     2161 tgcacattcc acagctccca acacagccgt caaaacccca gtaggacttt atttgaaaga
     2221 aaggcaaaaa gaaaaaaaaa aaaaaagcaa cagagaagtt
//
