LOCUS       XM_030254058            4672 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus bromodomain, testis-specific (Brdt),
            transcript variant X4, mRNA.
ACCESSION   XM_030254058
VERSION     XM_030254058.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4672
                     /gene="Brdt"
                     /gene_synonym="7420412D09Rik; Brd6; Fsrg3"
                     /note="bromodomain, testis-specific; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 105 long SRA reads, 18 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:114642"
                     /db_xref="MGI:MGI:1891374"
     CDS             252..3137
                     /gene="Brdt"
                     /gene_synonym="7420412D09Rik; Brd6; Fsrg3"
                     /codon_start=1
                     /product="bromodomain testis-specific protein isoform X1"
                     /protein_id="XP_030109918.1"
                     /db_xref="GeneID:114642"
                     /db_xref="MGI:MGI:1891374"
                     /translation="MSLPSRQTAIVNPPPPEYINTKKSGRLTNQLQFLQRVVLKALWK
                     HGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFS
                     NCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQEEQVVGGKERIKKDIQQKIAVSSAKE
                     QIPSKAAENVFKRQEIPSGLPDISLSPLNMAQEAPPICDSQSLVQITKGVKRRADTTT
                     PTTSIAKASSESPPTLRETKPVNMPVKENTVKNVLPDSQQQHKVLKTVKVTEQLKHCS
                     EILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAY
                     EFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDEPIESMHACHLTTNS
                     AQALSRESSSEASSGDASSEDSEDERVQHLAKLQEQLNAVHQQLQVLSQVPLRKLKKK
                     NEKSKRAPKRKKVNNRDENPRKKPKQMKQKEKAKINQPKKKKPLLKSEEEDNAKPMNY
                     DEKRQLSLDINKLPGDKLGRIVHIIQSREPSLRNSNPDEIEIDFETLKASTLRELEKY
                     VLACLRKRSLKPQAKKVVRSKEELHSEKKLELERRLLDVNNQLNCRKRQTKRPAKVEK
                     PPPPPPPPPPPPPPPELASGSRLTDSSSSSGSGSGSSSSSSGSSSSSSSSGSASSSSD
                     SSSSDSSDSEPEIFPKFTGVKQNDLPPKENIKQIQSSVQDITSAEAPLAQQSTAPCGA
                     PGKHSQQMLGCQVTQHLQATENTASVQTQPLSEYVLLGDCKRVLLGPPVVHTSAESLT
                     VLEPECHAPAQKDIKIKNADSWKSLGKPVKASSVLKSSDELFNQFRKAAIEKEVKART
                     QEQMRKHLEHNAKDPKVSQENQREPGSGLTLESLSSKVQDKSLEEDQSEQQPPSEAQD
                     VSKLWLLKDRNLAREKEQERRRREAMAGTIDMTLQSDIMTMFENNFD"
ORIGIN      
        1 ttaggagtgt cacagtgata gtctagtgac gtgacagact gccaagcagt ctggtcagga
       61 atttgtagac ttttcctgct aagacctcaa tttgtatttt tgaagaacag aaagaaattc
      121 tgtgacgtgt tgaaataatt taaaccatct aagaccaaga cacacataat gaagcaatgc
      181 atactattta tataaaaaag gacatgtcct cttagacaac tttaaaatac caggatccga
      241 agtggttgag aatgtctctg ccaagtcgac aaacagctat tgttaacccc cctccaccag
      301 agtacataaa cactaagaag agtgggcggt tgacgaatca gctgcagttc ctacagaggg
      361 ttgtgctgaa ggccctgtgg aagcacggct tctcttggcc tttccaacag ccggtggacg
      421 ccgtgaaact aaagctgcct gactattaca ccatcataaa aaccccaatg gatttaaata
      481 caattaagaa gcggttggaa aataagtatt atgagaaggc ttccgaatgc atagaagact
      541 tcaacacaat gttctcaaac tgctacttat acaacaagac tggagatgac attgttgtta
      601 tggcccaagc tctagagaag ttatttatgc agaaattatc tcagatgcca caagaagagc
      661 aagttgtggg tggtaaggag agaataaaga aagatatcca acaaaagata gcggtttcct
      721 ctgctaagga acaaatcccc tccaaagcgg cagagaatgt ctttaagcgg caagagattc
      781 cttctgggct tcctgacatc tctctctcgc ccttaaacat ggcacaagaa gctcccccga
      841 tctgtgactc gcagtctctg gtccaaatta caaagggtgt gaagaggcga gcagacacaa
      901 caactcctac cacttccata gctaaagcaa gtagcgaatc tcctccgaca cttagagaaa
      961 caaagccagt gaacatgcca gtaaaagaaa atacagtaaa gaacgttttg ccagactctc
     1021 agcaacaaca caaagtttta aaaacagtca aagtaacgga gcaattaaag cactgcagcg
     1081 agattcttaa agaaatgctt gccaagaaac atttgccgta tgcatggccc ttctataatc
     1141 ctgtggatgc tgatgctttg ggactccaca actactatga cgttgtcaaa aatcccatgg
     1201 atctcggaac gatcaagggg aaaatggaca atcaagaata taaggatgca tatgaatttg
     1261 ctgcagatgt cagactgatg ttcatgaact gttacaagta taatcctccc gatcatgaag
     1321 ttgtggcgat ggctcggacc cttcaggatg tttttgaact acattttgcc aagattcccg
     1381 atgaacctat tgagagtatg catgcatgcc accttacaac aaacagtgca caagccctca
     1441 gcagagaaag cagcagcgag gcctcctcgg gggacgcctc ttctgaagac tctgaggatg
     1501 aacgagtgca gcatcttgcc aagcttcagg agcagcttaa tgctgttcat cagcagctgc
     1561 aagttctgtc ccaagttcca ttacgtaagc tgaagaaaaa gaatgagaag tccaaaaggg
     1621 cgccaaaaag gaaaaaggtt aataacagag atgaaaaccc aaggaaaaag cctaagcaaa
     1681 tgaagcaaaa ggagaaggcc aaaatcaatc aaccaaagaa gaagaagccg cttttgaaat
     1741 cggaagagga agacaatgcg aagcctatga actacgatga gaaaaggcag ctgagcttgg
     1801 acataaacaa actgcctgga gacaagcttg gtcgaatagt tcacataata cagtcaaggg
     1861 agccttccct gagaaactcc aacccggacg agatcgagat cgactttgag accctgaagg
     1921 catccacact tagagaactg gagaagtatg tcctggcctg tctgaggaag aggtcgctga
     1981 agccccaagc aaagaaggtt gtcaggtcta aggaggagct ccattctgaa aaaaagctgg
     2041 agctggagag gcggttgctg gacgtcaaca atcagctgaa ttgtaggaaa cggcaaacga
     2101 aacgtccagc aaaagtggag aagccgcccc cgcccccgcc cccgcccccg cccccgccgc
     2161 ctcccccgga gctggccagt gggtctcgcc tgaccgacag cagcagcagc agcggcagcg
     2221 gcagcggcag cagcagcagc agcagcggca gcagcagcag cagcagctcc tcggggtccg
     2281 cgagcagcag cagcgactcg agctcctccg acagcagcga ttctgaacca gaaatatttc
     2341 ctaaatttac tggagtaaaa cagaatgatt tacctccaaa agaaaatata aagcagatac
     2401 aatcttctgt gcaagacata acctctgctg aagctcccct tgctcagcag agcacagcac
     2461 catgcggagc cccagggaag cactcccagc agatgcttgg ttgccaagtg acacagcatc
     2521 tgcaggccac agagaacact gcatctgtgc agactcagcc tctttcagag tatgtgcttc
     2581 taggtgattg caagcgagta ttgcttggcc cccctgtggt gcacacctct gctgagagcc
     2641 tcacagtgct ggagccagaa tgccatgctc ccgcgcagaa ggatataaag attaagaatg
     2701 cagactcttg gaaaagttta gggaagccag tgaaagcatc aagtgtactg aagtcttcag
     2761 atgagctttt caaccagttt agaaaagctg caatagaaaa ggaggtaaag gcccggacac
     2821 aggagcagat gcggaaacac ctggagcata atgcgaagga cccaaaagta tctcaagaaa
     2881 atcagaggga gcctggaagt ggattgactc tagaatcttt atcaagtaaa gtgcaagata
     2941 agtctcttga agaagatcag agtgaacagc agccaccgtc ggaagctcaa gacgtaagca
     3001 agctctggct tctcaaagac cggaatctag cgagggagaa agagcaagag cgcaggagaa
     3061 gagaagcaat ggcgggtacc attgatatga ctcttcaaag tgacattatg acaatgtttg
     3121 aaaataactt tgattaaaac tcagtttgta aattaaccct caactttaaa tgaaaggtaa
     3181 aagtgtttac agtgggcgtg gttaaagtgg ttactttaaa caccagaatg tcaatcactg
     3241 attgtgttct gactgcccta aataattttt catttacatt ttaataaata tgttctttta
     3301 atgacataat tgataaaatg ttttataatt ttgacctctg aaagtggata gattttattc
     3361 atcctaaaga ggactgtcag tgatgtaata tagtcctgat ctaagtctaa aagggatcat
     3421 cagattgaaa acaaatgaag aatacataaa agtatataaa acacgttttg ttgagatttt
     3481 aacttttgtt ttttgtctaa acctgtttgt tggttagttg gtttgtgtcc ttgtttgaga
     3541 cagggtctca tatactcagg ctggctttgg tgaactcaac atgtagccaa ggctggcctt
     3601 gatctcctga ttctcctgcc ctcagctctc aagtactgga ctccagaagt gtgtcttcat
     3661 gcctggctga gttgttaact tttcaaagag atatgtgtct gctgtcagaa ttgtaacaga
     3721 acttctaaca agaatacttg gtttccatgt gagtcacagt gtgtcagatt ctctgctagt
     3781 tccatgttta aattccatac tgccttttgt tttaaagtaa tattagctat gatttgaaag
     3841 gtgttaaatt ttaagcaaag taatagtaaa tattgtgtat acaagcttct gtgggaatgt
     3901 gtcagacatt tcttaaaatg tgtaggtgat agcaatgaat atttgcctaa ccaggggaaa
     3961 ttatagccta tgaaacattg atgttttgtc atttttcaaa ctgcatgcat gtctaaccat
     4021 atgtaatctt ttttaaaatt ttaaaccttt gaacatttga aatataacct gattaaggca
     4081 atgctgtgat ctaaagtaca aactcagtgt gtgtccagac agggaagtgc acacctgctg
     4141 tccagacagg gcagtgcaca cctgctatgc agacagggca gtgcacatct gctgtccaga
     4201 cagggcagtg cacacctgct atgcagacag ggcagtgcac acctgctgtc cagacagggc
     4261 agtgcacacc tgctatgtag acagggcagt gcacacctgc tgtccagaca gggcagtgca
     4321 cacctgctgt ccagacaggg cagtgcacac ctgctgtcca gacagggcag tgaacacctg
     4381 ctgtccagac agggcagtgc acacctgctg taattccagt atttgggggg cagaggcaga
     4441 gaaggagtca ctgctgataa ctcaagacca gcctggttca catagcaatc ttcagattct
     4501 ggtcatagcc agacctcctt gattgagaag aaccaagaaa gagagagaga aagagagtaa
     4561 gaagatggta ttgctttcag gaaacattgc tttcaggaaa caaccagaat taaagtgata
     4621 gatattttgt tgtacctatt ttctactttt taattaaaaa ctttatatga ta
//
