LOCUS       XM_006534728            4806 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus bromodomain, testis-specific (Brdt),
            transcript variant X1, mRNA.
ACCESSION   XM_006534728
VERSION     XM_006534728.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006534728.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4806
                     /gene="Brdt"
                     /gene_synonym="7420412D09Rik; Brd6; Fsrg3"
                     /note="bromodomain, testis-specific; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 22
                     ESTs, 173 long SRA reads, 18 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:114642"
                     /db_xref="MGI:MGI:1891374"
     CDS             386..3271
                     /gene="Brdt"
                     /gene_synonym="7420412D09Rik; Brd6; Fsrg3"
                     /codon_start=1
                     /product="bromodomain testis-specific protein isoform X1"
                     /protein_id="XP_006534791.1"
                     /db_xref="GeneID:114642"
                     /db_xref="MGI:MGI:1891374"
                     /translation="MSLPSRQTAIVNPPPPEYINTKKSGRLTNQLQFLQRVVLKALWK
                     HGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFS
                     NCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQEEQVVGGKERIKKDIQQKIAVSSAKE
                     QIPSKAAENVFKRQEIPSGLPDISLSPLNMAQEAPPICDSQSLVQITKGVKRRADTTT
                     PTTSIAKASSESPPTLRETKPVNMPVKENTVKNVLPDSQQQHKVLKTVKVTEQLKHCS
                     EILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAY
                     EFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDEPIESMHACHLTTNS
                     AQALSRESSSEASSGDASSEDSEDERVQHLAKLQEQLNAVHQQLQVLSQVPLRKLKKK
                     NEKSKRAPKRKKVNNRDENPRKKPKQMKQKEKAKINQPKKKKPLLKSEEEDNAKPMNY
                     DEKRQLSLDINKLPGDKLGRIVHIIQSREPSLRNSNPDEIEIDFETLKASTLRELEKY
                     VLACLRKRSLKPQAKKVVRSKEELHSEKKLELERRLLDVNNQLNCRKRQTKRPAKVEK
                     PPPPPPPPPPPPPPPELASGSRLTDSSSSSGSGSGSSSSSSGSSSSSSSSGSASSSSD
                     SSSSDSSDSEPEIFPKFTGVKQNDLPPKENIKQIQSSVQDITSAEAPLAQQSTAPCGA
                     PGKHSQQMLGCQVTQHLQATENTASVQTQPLSEYVLLGDCKRVLLGPPVVHTSAESLT
                     VLEPECHAPAQKDIKIKNADSWKSLGKPVKASSVLKSSDELFNQFRKAAIEKEVKART
                     QEQMRKHLEHNAKDPKVSQENQREPGSGLTLESLSSKVQDKSLEEDQSEQQPPSEAQD
                     VSKLWLLKDRNLAREKEQERRRREAMAGTIDMTLQSDIMTMFENNFD"
ORIGIN      
        1 cacgtggcag accctggcca atcagcaggc tgctcgcggg tgagtcccat aaaggcgcca
       61 gtcgctggct gctgacagcc gccatccggg cgagagctgg cggccaccgg tggagaaccg
      121 ggagcgacgg tcctgcactg cttcatctag tgcaaactga aagggtgatc ggataaggcc
      181 ctttcctaag aggaatttgt agacttttcc tgctaagacc tcaatttgta tttttgaaga
      241 acagaaagaa attctgtgac gtgttgaaat aatttaaacc atctaagacc aagacacaca
      301 taatgaagca atgcatacta tttatataaa aaaggacatg tcctcttaga caactttaaa
      361 ataccaggat ccgaagtggt tgagaatgtc tctgccaagt cgacaaacag ctattgttaa
      421 cccccctcca ccagagtaca taaacactaa gaagagtggg cggttgacga atcagctgca
      481 gttcctacag agggttgtgc tgaaggccct gtggaagcac ggcttctctt ggcctttcca
      541 acagccggtg gacgccgtga aactaaagct gcctgactat tacaccatca taaaaacccc
      601 aatggattta aatacaatta agaagcggtt ggaaaataag tattatgaga aggcttccga
      661 atgcatagaa gacttcaaca caatgttctc aaactgctac ttatacaaca agactggaga
      721 tgacattgtt gttatggccc aagctctaga gaagttattt atgcagaaat tatctcagat
      781 gccacaagaa gagcaagttg tgggtggtaa ggagagaata aagaaagata tccaacaaaa
      841 gatagcggtt tcctctgcta aggaacaaat cccctccaaa gcggcagaga atgtctttaa
      901 gcggcaagag attccttctg ggcttcctga catctctctc tcgcccttaa acatggcaca
      961 agaagctccc ccgatctgtg actcgcagtc tctggtccaa attacaaagg gtgtgaagag
     1021 gcgagcagac acaacaactc ctaccacttc catagctaaa gcaagtagcg aatctcctcc
     1081 gacacttaga gaaacaaagc cagtgaacat gccagtaaaa gaaaatacag taaagaacgt
     1141 tttgccagac tctcagcaac aacacaaagt tttaaaaaca gtcaaagtaa cggagcaatt
     1201 aaagcactgc agcgagattc ttaaagaaat gcttgccaag aaacatttgc cgtatgcatg
     1261 gcccttctat aatcctgtgg atgctgatgc tttgggactc cacaactact atgacgttgt
     1321 caaaaatccc atggatctcg gaacgatcaa ggggaaaatg gacaatcaag aatataagga
     1381 tgcatatgaa tttgctgcag atgtcagact gatgttcatg aactgttaca agtataatcc
     1441 tcccgatcat gaagttgtgg cgatggctcg gacccttcag gatgtttttg aactacattt
     1501 tgccaagatt cccgatgaac ctattgagag tatgcatgca tgccacctta caacaaacag
     1561 tgcacaagcc ctcagcagag aaagcagcag cgaggcctcc tcgggggacg cctcttctga
     1621 agactctgag gatgaacgag tgcagcatct tgccaagctt caggagcagc ttaatgctgt
     1681 tcatcagcag ctgcaagttc tgtcccaagt tccattacgt aagctgaaga aaaagaatga
     1741 gaagtccaaa agggcgccaa aaaggaaaaa ggttaataac agagatgaaa acccaaggaa
     1801 aaagcctaag caaatgaagc aaaaggagaa ggccaaaatc aatcaaccaa agaagaagaa
     1861 gccgcttttg aaatcggaag aggaagacaa tgcgaagcct atgaactacg atgagaaaag
     1921 gcagctgagc ttggacataa acaaactgcc tggagacaag cttggtcgaa tagttcacat
     1981 aatacagtca agggagcctt ccctgagaaa ctccaacccg gacgagatcg agatcgactt
     2041 tgagaccctg aaggcatcca cacttagaga actggagaag tatgtcctgg cctgtctgag
     2101 gaagaggtcg ctgaagcccc aagcaaagaa ggttgtcagg tctaaggagg agctccattc
     2161 tgaaaaaaag ctggagctgg agaggcggtt gctggacgtc aacaatcagc tgaattgtag
     2221 gaaacggcaa acgaaacgtc cagcaaaagt ggagaagccg cccccgcccc cgcccccgcc
     2281 cccgcccccg ccgcctcccc cggagctggc cagtgggtct cgcctgaccg acagcagcag
     2341 cagcagcggc agcggcagcg gcagcagcag cagcagcagc ggcagcagca gcagcagcag
     2401 ctcctcgggg tccgcgagca gcagcagcga ctcgagctcc tccgacagca gcgattctga
     2461 accagaaata tttcctaaat ttactggagt aaaacagaat gatttacctc caaaagaaaa
     2521 tataaagcag atacaatctt ctgtgcaaga cataacctct gctgaagctc cccttgctca
     2581 gcagagcaca gcaccatgcg gagccccagg gaagcactcc cagcagatgc ttggttgcca
     2641 agtgacacag catctgcagg ccacagagaa cactgcatct gtgcagactc agcctctttc
     2701 agagtatgtg cttctaggtg attgcaagcg agtattgctt ggcccccctg tggtgcacac
     2761 ctctgctgag agcctcacag tgctggagcc agaatgccat gctcccgcgc agaaggatat
     2821 aaagattaag aatgcagact cttggaaaag tttagggaag ccagtgaaag catcaagtgt
     2881 actgaagtct tcagatgagc ttttcaacca gtttagaaaa gctgcaatag aaaaggaggt
     2941 aaaggcccgg acacaggagc agatgcggaa acacctggag cataatgcga aggacccaaa
     3001 agtatctcaa gaaaatcaga gggagcctgg aagtggattg actctagaat ctttatcaag
     3061 taaagtgcaa gataagtctc ttgaagaaga tcagagtgaa cagcagccac cgtcggaagc
     3121 tcaagacgta agcaagctct ggcttctcaa agaccggaat ctagcgaggg agaaagagca
     3181 agagcgcagg agaagagaag caatggcggg taccattgat atgactcttc aaagtgacat
     3241 tatgacaatg tttgaaaata actttgatta aaactcagtt tgtaaattaa ccctcaactt
     3301 taaatgaaag gtaaaagtgt ttacagtggg cgtggttaaa gtggttactt taaacaccag
     3361 aatgtcaatc actgattgtg ttctgactgc cctaaataat ttttcattta cattttaata
     3421 aatatgttct tttaatgaca taattgataa aatgttttat aattttgacc tctgaaagtg
     3481 gatagatttt attcatccta aagaggactg tcagtgatgt aatatagtcc tgatctaagt
     3541 ctaaaaggga tcatcagatt gaaaacaaat gaagaataca taaaagtata taaaacacgt
     3601 tttgttgaga ttttaacttt tgttttttgt ctaaacctgt ttgttggtta gttggtttgt
     3661 gtccttgttt gagacagggt ctcatatact caggctggct ttggtgaact caacatgtag
     3721 ccaaggctgg ccttgatctc ctgattctcc tgccctcagc tctcaagtac tggactccag
     3781 aagtgtgtct tcatgcctgg ctgagttgtt aacttttcaa agagatatgt gtctgctgtc
     3841 agaattgtaa cagaacttct aacaagaata cttggtttcc atgtgagtca cagtgtgtca
     3901 gattctctgc tagttccatg tttaaattcc atactgcctt ttgttttaaa gtaatattag
     3961 ctatgatttg aaaggtgtta aattttaagc aaagtaatag taaatattgt gtatacaagc
     4021 ttctgtggga atgtgtcaga catttcttaa aatgtgtagg tgatagcaat gaatatttgc
     4081 ctaaccaggg gaaattatag cctatgaaac attgatgttt tgtcattttt caaactgcat
     4141 gcatgtctaa ccatatgtaa tcttttttaa aattttaaac ctttgaacat ttgaaatata
     4201 acctgattaa ggcaatgctg tgatctaaag tacaaactca gtgtgtgtcc agacagggaa
     4261 gtgcacacct gctgtccaga cagggcagtg cacacctgct atgcagacag ggcagtgcac
     4321 atctgctgtc cagacagggc agtgcacacc tgctatgcag acagggcagt gcacacctgc
     4381 tgtccagaca gggcagtgca cacctgctat gtagacaggg cagtgcacac ctgctgtcca
     4441 gacagggcag tgcacacctg ctgtccagac agggcagtgc acacctgctg tccagacagg
     4501 gcagtgaaca cctgctgtcc agacagggca gtgcacacct gctgtaattc cagtatttgg
     4561 ggggcagagg cagagaagga gtcactgctg ataactcaag accagcctgg ttcacatagc
     4621 aatcttcaga ttctggtcat agccagacct ccttgattga gaagaaccaa gaaagagaga
     4681 gagaaagaga gtaagaagat ggtattgctt tcaggaaaca ttgctttcag gaaacaacca
     4741 gaattaaagt gatagatatt ttgttgtacc tattttctac tttttaatta aaaactttat
     4801 atgata
//
