LOCUS       NM_028528               1110 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus BPI fold containing family A, member 3 (Bpifa3),
            transcript variant 1, mRNA.
ACCESSION   NM_028528 XM_130597
VERSION     NM_028528.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Lu,Y., Oura,S., Matsumura,T., Oji,A., Sakurai,N., Fujihara,Y.,
            Shimada,K., Miyata,H., Tobita,T., Noda,T., Castaneda,J.M.,
            Kiyozumi,D., Zhang,Q., Larasati,T., Young,S.A.M., Kodani,M.,
            Huddleston,C.A., Robertson,M.J., Coarfa,C., Isotani,A.,
            Aitken,R.J., Okabe,M., Matzuk,M.M., Garcia,T.X. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched
            genes dispensable for male fertility in micedagger
  JOURNAL   Biol Reprod 101 (2), 501-511 (2019)
   PUBMED   31201419
REFERENCE   3  (bases 1 to 1110)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1110)
  AUTHORS   Bingle,C.D., Seal,R.L. and Craven,C.J.
  TITLE     Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a
            subfamily of the BPI fold-containing superfamily
  JOURNAL   Biochem Soc Trans 39 (4), 977-983 (2011)
   PUBMED   21787333
REFERENCE   5  (bases 1 to 1110)
  AUTHORS   Bingle,C.D., LeClair,E.E., Havard,S., Bingle,L., Gillingham,P. and
            Craven,C.J.
  TITLE     Phylogenetic and evolutionary analysis of the PLUNC gene family
  JOURNAL   Protein Sci 13 (2), 422-430 (2004)
   PUBMED   14739326
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732466.7 and AK006829.1.
            
            On Mar 22, 2014 this sequence version replaced NM_028528.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049691.1, SRR5189685.81320.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                AL732466.7         152972-152982
            12-885              AK006829.1         2-875
            886-1110            AL732466.7         160771-160995
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 76.15 cM"
     gene            1..1110
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /note="BPI fold containing family A, member 3"
                     /db_xref="GeneID:73388"
                     /db_xref="MGI:MGI:1920638"
     exon            1..327
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     exon            328..478
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     exon            479..586
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     exon            587..736
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     exon            737..821
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     exon            822..885
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1110
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1086..1091
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /note="hexamer: AATAAA"
     polyA_site      1108
                     /gene="Bpifa3"
                     /gene_synonym="1700058C13Rik; Splunc3"
                     /note="major polyA site"
ORIGIN      
        1 gctgtccatg tgagctaacc ctgggagcag ctaccagagc catttgcacc acctcccaca
       61 gcatgctggg gacagctgtg aagccacctg tccaaagaca gctgtaagcc catcgatctg
      121 ggtggccata ctcacagcca actgtctggg ccctgctgga ccattactga cacctgcagg
      181 ttcgggtgcc agcacctgag atgcatctac tctggaggct cctggttctc ctcctcggat
      241 tgctagcctt gccctcagcc ctgcccaagc agccttggcc tggactgacc aaggctcaca
      301 aggatggccg gtccacccta gcgagaatta ttgcacaggg cctcctgaag ctcaatgcag
      361 aaggacggat ccagagcatg cgccttctgg accgtctgaa cgtctcaggg acagtggctc
      421 cagggatggt gggctggctg attggtggca tgaacttcca gcagcaacaa gaaatcagca
      481 tcaacattac caatgtgcag ctggactgtg gtgggatcca gatggctttc cccaaagagt
      541 ggttctctgc aaacatcaca cttgaatttg acattgaatt caaactgccc ttcaattcga
      601 atatcatcaa aacgcatgcc tgcatgggcc tcactgcaga gtcctggctg gagaaagatg
      661 agtttggccg gagggagctg gtgatgggca ggtgtcgaat ggagcccagc agtgggggtg
      721 catccatgtc cactgaggaa acctcaccga agatgaaaca ttttctccat aacctcagag
      781 aaagcctagg gaaagttatc ccaaatctgg tagaaagtca ggtctgtcct ctgattggtg
      841 agatcctccg gcagctggat gtgaagctgc tgaaaggcct agtagaacag gtgcctgctc
      901 ataatctggg tcaaccctga atcagtcaga tctctgctgc cagactcaag gagcctccca
      961 ttgcctgcca ttgatcagaa ggaggtactt ccgattgaga ccttaagtct ccctcaatgt
     1021 gtggcttctg ctgtcccctg gaaaaaaatg acccccaggt cccaaaacat cctgtccttt
     1081 ccaacaataa actctaagtc tgaagggaca
//
