LOCUS       NM_028005               1802 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus BLOC-1 related complex subunit 6 (Borcs6), mRNA.
ACCESSION   NM_028005 XM_484040 XM_908518
VERSION     NM_028005.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Bell,C.J., Gupta,N., Tremblay,K.D. and Mager,J.
  TITLE     Borcs6 is required for endo-lysosomal degradation during early
            development
  JOURNAL   Mol Reprod Dev 89 (8), 337-350 (2022)
   PUBMED   35726782
REFERENCE   3  (bases 1 to 1802)
  AUTHORS   Yordanov,T.E., Hipolito,V.E.B., Liebscher,G., Vogel,G.F.,
            Stasyk,T., Herrmann,C., Geley,S., Teis,D., Botelho,R.J., Hess,M.W.
            and Huber,L.A.
  TITLE     Biogenesis of lysosome-related organelles complex-1 (BORC)
            regulates late endosomal/lysosomal size through PIKfyve-dependent
            phosphatidylinositol-3,5-bisphosphate
  JOURNAL   Traffic 20 (9), 674-696 (2019)
   PUBMED   31314175
REFERENCE   4  (bases 1 to 1802)
  AUTHORS   Kalin,S., Becker,M., Ott,V.B., Serr,I., Hosp,F., Mollah,M.M.H.,
            Keipert,S., Lamp,D., Rohner-Jeanrenaud,F., Flynn,V.K., Scherm,M.G.,
            Nascimento,L.F.R., Gerlach,K., Popp,V., Dietzen,S., Bopp,T.,
            Krishnamurthy,P., Kaplan,M.H., Serrano,M., Woods,S.C., Tripal,P.,
            Palmisano,R., Jastroch,M., Bluher,M., Wolfrum,C., Weigmann,B.,
            Ziegler,A.G., Mann,M., Tschop,M.H. and Daniel,C.
  TITLE     A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue
            Function
  JOURNAL   Cell Metab 26 (3), 475-492 (2017)
   PUBMED   28877454
REFERENCE   5  (bases 1 to 1802)
  AUTHORS   Pu,J., Schindler,C., Jia,R., Jarnik,M., Backlund,P. and
            Bonifacino,J.S.
  TITLE     BORC, a multisubunit complex that regulates lysosome positioning
  JOURNAL   Dev Cell 33 (2), 176-188 (2015)
   PUBMED   25898167
REFERENCE   6  (bases 1 to 1802)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   7  (bases 1 to 1802)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK151629.1.
            
            On Apr 6, 2007 this sequence version replaced NM_028005.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK151629.1, AK009886.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1802              AK151629.1         3-1804
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 42.33 cM"
     gene            1..1802
                     /gene="Borcs6"
                     /gene_synonym="2310047M10Rik"
                     /note="BLOC-1 related complex subunit 6"
                     /db_xref="GeneID:71923"
                     /db_xref="MGI:MGI:1919173"
     exon            1..1802
                     /gene="Borcs6"
                     /gene_synonym="2310047M10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1106
                     /gene="Borcs6"
                     /gene_synonym="2310047M10Rik"
                     /codon_start=1
                     /product="BLOC-1-related complex subunit 6"
                     /protein_id="NP_082281.2"
                     /db_xref="CCDS:CCDS36190.1"
                     /db_xref="GeneID:71923"
                     /db_xref="MGI:MGI:1919173"
                     /translation="MEAAQGRLGPEPELSVGAEHQAATFSGRPSRTPSKPPSVRTLSG
                     EEEAESVGVSSRHPRASPKTWSGSIAHGPELDTWEDKPSSRATPSGARGRRGVPGSEH
                     APPPSSWYPEPEPSEDQPSALRVCRRGSPGGVEMNVELPQQEGDDDDDEDEEAAAGRA
                     GRSFPSRLQDSRSLDGLSGACGGGGSSSSGETGAGGGRRATISSPLELEGTVSRHGDL
                     THFVANNLQLKIRLSGAPPPVPPASVRPCLTPAPTPTIPPIDPDVLRDLERLSRELGG
                     RVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERA
                     LQPVQGLARQVRDIRRTLEVLEALCK"
     polyA_site      1802
                     /gene="Borcs6"
                     /gene_synonym="2310047M10Rik"
                     /note="putative"
ORIGIN      
        1 cggttccggc ccccaccctc agtatggagg ccgcccaggg gcggctcggg ccggagccgg
       61 agctttcggt cggagctgag caccaggccg cgactttcag cggcaggccg tcccgaacgc
      121 cctcgaagcc gccctcagtc cggacgctgt ccggggagga agaggctgag agcgttgggg
      181 tctcgagccg tcatccccga gcgtccccaa agacttggag cggcagcatc gcccatgggc
      241 cggagctgga cacttgggag gacaagccga gctcccgggc gacgccgtca ggggcccggg
      301 gacgccgggg ggtgccaggt tccgagcacg ccccgccccc gtcctcctgg tacccggagc
      361 cggagcccag cgaggatcag ccctccgctc tgagggtctg ccgtcgaggg agccccggag
      421 gcgtcgagat gaatgtggag ctgccgcagc aagagggtga cgacgacgac gacgaggacg
      481 aagaggcggc ggcgggtagg gctggccgct ccttccccag ccgccttcag gacagccgca
      541 gcctggacgg gctgagtggg gcgtgcggtg gaggggggtc ttcatccagt ggcgagaccg
      601 gcgcgggcgg aggacgtcgc gccactatct ccagccccct agagctggag ggcacggtga
      661 gccgccacgg cgaccttact cactttgtgg ccaacaacct acaactcaag atccgactga
      721 gtggcgcccc accacccgtt ccccctgcct ctgtgcggcc ctgcctaacg cccgcaccca
      781 cccccaccat ccctcccatc gacccggacg tgctgaggga tctggagcgg ctgagtcgcg
      841 agctgggcgg ccgggtagac cgtctgcttc gcgggctggg tggtgcggtg caagagctga
      901 cagcgttgag tgtgggctgt atccagacct accgcgacgc ggtggactcc ttaggtgaag
      961 ccgtggacat gagcattaag ggcatgtaca ccttacttgc gcgctgcgag gagctggaac
     1021 gggctttgca accggttcag gggctggcac gccaagtccg agatatccga cgcacgctgg
     1081 aggtgttgga ggccctatgc aagtgaccag gagcatagag gagagaccat gcgtaacctg
     1141 gccagaccag ggtccagtag gaccctcagg attcttcaaa gagccctggt ggaaactgct
     1201 tgctgagggg atgcctgtac gttagaggtt cttccacaag cgtttaggag gcctgtgccc
     1261 attctaagcc tatggagtgt gaatggggaa gttgtgagga ttctcctggt gaaaagggat
     1321 gtagctctgc ttttattcag ttggccatct atagctaccc tgttcttcct gacccttctc
     1381 cctaagctag aacaccgtcc atgggaatac aggcccttag atctctgctg gagggtgggg
     1441 cagacacgaa tgtgtgatca gagagacctc agccccgctg cggctatccg gatcccaatg
     1501 gtcacacacc tcaagtgcca ggggctttag gaacttgagc ggttcttgcc cacacaccat
     1561 gcgagggtga gggcgcaaca tctgcataac ctcccgcttc tttcctctgg tcccctaaaa
     1621 tgccacgggg tggaggagca catttcatga tggagggaga gcggtggggg gcacggggga
     1681 gtgtctcact gctctcaggg ttccggtcga attgttactg gttttgaagc ccacctgttg
     1741 tggagtattc taattaattt tggctttctg agtttttgtg gaattaaagt gctgctgctg
     1801 ct
//
