LOCUS       NM_172450               4594 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus BCL2 interacting protein 5 (Bnip5), mRNA.
ACCESSION   NM_172450
VERSION     NM_172450.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4594)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4594)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CT025867.20
            and AC140278.2.
            
            On May 1, 2007 this sequence version replaced NM_172450.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK033585.1, BC117930.2 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               CT025867.20        24301-24456         c
            157-737             AC140278.2         2981-3561
            738-857             AC140278.2         4466-4585
            858-922             AC140278.2         7098-7162
            923-1163            AC140278.2         7358-7598
            1164-1298           AC140278.2         8203-8337
            1299-1360           AC140278.2         9545-9606
            1361-1610           AC140278.2         9831-10080
            1611-1736           AC140278.2         10778-10903
            1737-1801           AC140278.2         11658-11722
            1802-2065           AC140278.2         13107-13370
            2066-4594           AC140278.2         13930-16458
FEATURES             Location/Qualifiers
     source          1..4594
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 15.03 cM"
     gene            1..4594
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /note="BCL2 interacting protein 5"
                     /db_xref="GeneID:207819"
                     /db_xref="MGI:MGI:1925441"
     exon            1..156
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..2101
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /note="uncharacterized protein C6orf222 homolog"
                     /codon_start=1
                     /product="protein BNIP5"
                     /protein_id="NP_766038.1"
                     /db_xref="CCDS:CCDS28586.1"
                     /db_xref="GeneID:207819"
                     /db_xref="MGI:MGI:1925441"
                     /translation="MPRSRNPSQGMPRDSSDSCGLSPVETPKGKKRARSLDRQVPRKK
                     DPESSNTRCPSSATCRRTASDGARSSESPSHFAEAQGATAAALPPGEGRGFLPSEQGP
                     PEDTKKERLPREAQQSWLRLVLNILLMRIEEPREKASRASKGKGDLPEAAEEPALRKK
                     SHEKRTSRKKHSHRKPIAEEPPGPQTAEAQGREDVPPSLAASSAPHEIALGLICRGGP
                     DSDLPQALPTEGDHAETPDSFGQASGPPLEEDPRKPDQDDVIWQIVELLKKAGDQLEE
                     EQVQIPQPEAVPPRKPTPLPRKKSQEKKSSLKRVLSLKKPASEEPKRVGTATTLGPET
                     RPKRPSFLPLCVSSQRASTSSSLDLEAPEFQEVPSVDGGGSHPSELHTPAAIFQGPEE
                     KPLLDRASESREFRRKILVLLQSAEDERGEQEAQAQEAEKAGENPTPAGKVKSQVKKS
                     NLRRAFSLRKHSSKDSKKTEASGTPGSGSLEARPPKKHGFLPMCVSGHRASISSSPES
                     LEFQKTEAAGGAPAGSPGAPFQARSHTPDEGPSPERAWESKEFMIQKLVASLQEVDRD
                     LGRQIRKYPSFKRFFNEFSDASLRKLVATLERQKASLSEEGRSLANRPPPCAFGTLNK
                     FAATRSCTICTLMQSRGEYKGHSYAHFLSRKAEQDITNLDSQSPD"
     exon            157..737
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            738..857
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            858..922
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1163
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..1298
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1360
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1610
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            1611..1736
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            1737..1801
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            1802..2065
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
     exon            2066..4594
                     /gene="Bnip5"
                     /gene_synonym="4930539E08Rik; 9130014G02"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaatagtgtt agcagttgca cgcaacagca gcttcttctc cctggaagtg ctggagctga
       61 cccacaaagg acttctacat aacaaggaac aatgcccaga tcaaggaatc ccagccaagg
      121 gatgccccgg gacagcagcg actcctgtgg tctgagcccg gtggagaccc cgaagggaaa
      181 aaagagagcc cgatccttgg accggcaggt tcccaggaag aaggaccccg agtcctcgaa
      241 caccaggtgc ccctccagcg ccacctgcag gaggacagcc agcgatggag ccagaagttc
      301 tgagagccca tctcactttg cagaggcaca gggcgcaacc gccgcagccc tccctccggg
      361 agaggggcgc ggatttctcc ccagtgagca gggcccccca gaagacacca agaaagagag
      421 gcttccgagg gaggcccagc agagctggct gaggctggtg ctgaatatct tactcatgag
      481 gatagaagag cccagagaaa aggccagcag ggcgtcaaag ggaaaagggg acctaccaga
      541 ggcagccgag gagccagccc tcaggaagaa atcgcacgag aagagaacca gccgcaagaa
      601 gcacagtcac aggaaaccta tagcagaaga gcctccgggt ccccagaccg ctgaagcgca
      661 aggccgagag gacgtaccgc ccagtttggc tgcctcaagc gccccccatg agatagccct
      721 ggggctgatc tgcagggggg gaccagattc tgaccttcct caggccttgc ccactgaagg
      781 agaccatgct gaaaccccag acagctttgg ccaagcctca ggtcctccat tagaagagga
      841 ccccaggaag cctgaccagg atgatgtcat ctggcagatt gtggaattgc tcaagaaagc
      901 tggagaccaa ctggaagaag agcaagtgca aatccctcag ccagaagcgg ttcctccacg
      961 aaagccaacg ccactcccca ggaagaaatc ccaggagaag aagtccagcc tgaagagagt
     1021 cttatccctc aagaagcctg cctctgagga acccaagaga gtcggcacag ccactaccct
     1081 gggcccagaa acccggccca agaggcccag cttcctaccc ctgtgtgtta gtagccagcg
     1141 agcttccacc tccagcagcc ttgacttgga ggcgcctgag ttccaagagg tcccgtctgt
     1201 agatggtgga ggctcccatc cctctgagct ccacacacca gctgccatat ttcagggacc
     1261 cgaggagaag ccactgctgg acagagcctc cgaatccaga gaattcaggc ggaagatcct
     1321 ggtcctgctc cagagtgcag aggacgagag gggagagcag gaagctcaag cgcaggaggc
     1381 agagaaggcc ggagaaaacc cgaccccagc cggcaaggtg aagtcccagg tgaagaagtc
     1441 taacctccgg agagcctttt ctctcaggaa acacagctcc aaggattcta agaaaacaga
     1501 ggcttcaggg actccaggct ctggcagcct agaggcccgg ccacccaaga agcacggctt
     1561 cctgcccatg tgtgtcagtg gccacagagc ttccatctcc agcagcccag aaagcctgga
     1621 gttccagaag acggaggctg caggaggggc accagctggg tccccaggag cgcctttcca
     1681 ggccaggagt cacacaccag atgaggggcc ttcaccagag cgagcctggg aatctaagga
     1741 gttcatgatc caaaagctcg tggcgagtct ccaagaggtg gacagggatc tagggaggca
     1801 gatccggaag taccccagct tcaagcgttt ttttaacgag ttctcggatg cctccctcag
     1861 gaagctggtg gctaccttag agagacagaa ggccagcctc tcagaggaag gccggagcct
     1921 cgctaacagg ccgccaccct gtgcctttgg cacactgaac aagtttgcgg ccacccgcag
     1981 ctgcaccatc tgcaccctga tgcagtccag aggcgaatac aagggacaca gttacgccca
     2041 cttcctgtcc aggaaggccg agcaggacat cacgaatctg gatagccaga gtccggactg
     2101 aaggccacat ctcatacaca agttctttct gagtagccaa tagtcagcag ctttggcccg
     2161 gagacccgga agacccccat aggatggccc acttttgtga ttccctgcag gcaagaatgg
     2221 accatggaca attctctgtg cgctcagcat tgtctgggaa cactttcttc cgggaagtgg
     2281 gacccagaag ctgtgctggg gtcggcactg gaatggggtt aggaggtcag gcttcatcga
     2341 gtgaacctgg aggctctccc ctctgcatcc catcccccca ccctcaactc cctcatccct
     2401 catgactgac atctgccaaa tccatgagtc ttagctggtg tgtgtgtata tatgtctgct
     2461 tatctgcctg cctgcctgcc cgcctgtctg tctctgtgtg tcactgggtg gagggaggta
     2521 gtgtaggtca gaggtcaatc cccggtatcc cgcctccagt tcgatctgcc ttgttttttg
     2581 agactcaccc aagcaggttt gtctgaggtt gagagtccaa gggatctgcc tggttcagcg
     2641 ctgacatcac ccaaacttag gccaccacac cccaccataa atgagtcttc attttgaaaa
     2701 atagttttta aattcagttt ccagctggaa aacacacatg cattcaaata gctgtagctg
     2761 tgtctctgcc acgtcactcc cgatctcccg ggattaaagg catgtgccac caccgcccag
     2821 ttaattattt tatcgtattg agaaaggtct cactctgtgg cccaggtgag catctctcta
     2881 ccccaacccc accctagtct cttgagtact gagactacag ctgtgtgcca ccacacctgg
     2941 gctactttac atggtcacag ctgggtagat ttcagaaagt cgaagagggc ttcaagctgg
     3001 actgccccag atgctgcaca gatgtgcact gccccaaagc ctcttgccct aagacatgca
     3061 gccttcatcc tgtctgtgct ggatggttgt gtgtcaactt gacacaagct ggagttatca
     3121 cagagaaagg agcctctgtt gaggaaatgc ctccatgaga tccagctgta aggcattttc
     3181 tcaactagtg atcaaggggg gagggcccag cccagtgtgg gtggggccat ccttgggctg
     3241 gtggtcctgg gttctacaag aaggtaggct gagcaagcca cggggagcaa gccagtaagt
     3301 agccccgctc tgtggtgtct gcttcagctc ctgcctccag gttcctgccc tgtgtgagtt
     3361 cctgtcctga cttcctttgg tgatgaacct cgatttggaa gtgtaagcag gttaaaccct
     3421 ttcctctcaa tttacatttt ggtcacagtg ttgggttaga aaccctgact aagacaccat
     3481 tatcactgat ggctgggacg tgtttggccc tcttgtggat gtgtctatct gcacaattgt
     3541 gagatgtggc cagtgacata gatacgcata ttcgtcacac gtccataccc acacacagga
     3601 gctggggcca ttgactccct gggctattgg caggaaagtg tgaccatggg ggagggtatc
     3661 aaagcctggg tggcagagtg agtctcgtaa gccttggaga ctattggtgg ccacagcagg
     3721 ctcatggcac ctgggctgaa tggcttcatt catggcagct gaatggaggt aggaaggcct
     3781 ggctctcagg tggaggcagt ctcaagcgaa ggcatccttt caggaagttc aactaaaatc
     3841 ctccctttat ttatttattt ttaattccat caaggtgtct cttactggca cttgatctcc
     3901 ttatagattt attttaggta gtattcttgg gtgtggcatg gacgtgcaag agccaaagct
     3961 ttgagtgact tttcaaaaga tggtgttgtg tgcattggtg ggttattttt gtttgtttgt
     4021 ttgtttgttt gtttttgcct gcgtgtgtat ctgtgtgtgg gtgtcagact cctggaattg
     4081 gagttacaag aaattactgt aatgtggatg ctgggaattg aacctggggc ctctggaaga
     4141 gcagtcaatg ccctcttatc cactgagcca tctctccagc cccgggaact aaatttttga
     4201 aacaagggtc aggagccttt tgtacatagt ttattttatt attagcaaat cagtcttcta
     4261 catagttcag gttagttacc acacccaact gtacatagtt tcttttattt atatataaat
     4321 tatgttttca ttttaaatta tgtgggttgg tatgagtgca gtatccacgg aagccagaag
     4381 agggtgctgt atctcatggc gctggatggt tgtaagctgc ctgctgggaa cagggcttgt
     4441 tttaccactg agtgctcgct ccaaaccttg gacattgtct cttatctgta agaacgacta
     4501 tccaggctgt agaatatttg ttatgagttc ccgatgctgg catccaagtc tggtttttat
     4561 actgtgttgt ttgaaccaat aaagacactg actc
//
