LOCUS       NM_172149               1100 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus BCL2/adenovirus E1B interacting protein 1 (Bnip1),
            mRNA.
ACCESSION   NM_172149 XM_355000
VERSION     NM_172149.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Silvestri,C., Narimatsu,M., von Both,I., Liu,Y., Tan,N.B., Izzi,L.,
            McCaffery,P., Wrana,J.L. and Attisano,L.
  TITLE     Genome-wide identification of Smad/Foxh1 targets reveals a role for
            Foxh1 in retinoic acid regulation and forebrain development
  JOURNAL   Dev Cell 14 (3), 411-423 (2008)
   PUBMED   18331719
  REMARK    Erratum:[Dev Cell. 2008 Apr;14(4):633]
REFERENCE   3  (bases 1 to 1100)
  AUTHORS   Boyd,J.M., Malstrom,S., Subramanian,T., Venkatesh,L.K.,
            Schaeper,U., Elangovan,B., D'Sa-Eipper,C. and Chinnadurai,G.
  TITLE     Adenovirus E1B 19 kDa and Bcl-2 proteins interact with a common set
            of cellular proteins
  JOURNAL   Cell 79 (2), 341-351 (1994)
   PUBMED   7954800
  REMARK    Erratum:[Cell. 1994 Dec 16;79(6):1121.. PMID: 8001138]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CV560804.1, AY547731.1 and AW060311.1.
            
            On Aug 1, 2009 this sequence version replaced NM_172149.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086888.1, SRR1660817.456729.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                CV560804.1         1-14
            15-701              AY547731.1         1-687
            702-1100            AW060311.1         1-399               c
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 13.56 cM"
     gene            1..1100
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /note="BCL2/adenovirus E1B interacting protein 1"
                     /db_xref="GeneID:224630"
                     /db_xref="MGI:MGI:109328"
     exon            1..98
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..701
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /note="BCL2/adenovirus E1B 19kDa-interacting protein 1,
                     NIP1; SNARE protein SEC20; BCL2/adenovirus E1B interacting
                     protein 1, NIP1"
                     /codon_start=1
                     /product="vesicle transport protein SEC20"
                     /protein_id="NP_742161.4"
                     /db_xref="CCDS:CCDS28555.1"
                     /db_xref="GeneID:224630"
                     /db_xref="MGI:MGI:109328"
                     /translation="MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSELTELN
                     TKVKEKFQQLKQRIQELEQSAREQDKESEKQLLLQEVENHKKQMLSNQTSWRKANLTC
                     KLAIDNLEKAELLQGGDSLRQRKTTKESLAQTSSSITESLMGISRMMSQQVQQSEEAM
                     QTLVSSSRTLLDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLY
                     IVKKRLFPFL"
     exon            99..191
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /inference="alignment:Splign:2.1.0"
     exon            192..283
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /inference="alignment:Splign:2.1.0"
     exon            284..385
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /inference="alignment:Splign:2.1.0"
     exon            386..504
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /inference="alignment:Splign:2.1.0"
     exon            505..1085
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1066..1071
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /note="hexamer: AATAAA"
     polyA_site      1085
                     /gene="Bnip1"
                     /gene_synonym="2010005M06Rik; 5930429G21Rik; Sec20"
                     /note="major polyA site"
ORIGIN      
        1 gccgcatttc caacatggcg gctccccagg atgtccacgt ccggatctgt aaccaagaga
       61 ttgtcaaatt cgacctagag gtgaaggcgc ttatccagga tattcgagat tgttctggac
      121 ccttaagtga gcttactgaa ctgaatacta aggtgaaaga aaagttccaa cagttaaaac
      181 agaggatcca ggagctcgaa cagtcagcaa gggagcaaga caaggagtca gagaagcagc
      241 ttctacttca ggaagtggag aaccacaaaa agcagatgct cagcaaccag acctcatggc
      301 gaaaagccaa tcttacctgc aagcttgcca tcgacaacct ggagaaggca gaacttctgc
      361 aaggaggaga ctccttacgg caaaggaaaa ccaccaaaga gagtttggcc cagacctcca
      421 gctccatcac agagagtctc atggggatca gcaggatgat gtcacagcag gtgcaacaga
      481 gcgaggaggc tatgcagact ctagtcagct cctcacggac tctcctggat gcaaacgaag
      541 agtttaagtc catgtcggga accatccagt tgggccggaa gctcatcaca aagtacaacc
      601 gccgagaact gacggacaag ctgctcatct tcctggccct ggccctcttc ctcgctacag
      661 tcctttatat tgtgaaaaag cgcctctttc catttttgta agcgagagct gccagctttg
      721 gcctgtgcac gcctgctcca ggatccgggc cgggatctca aggactagcc gggctgccaa
      781 actggacttc ccctctccct cgggggctcg gtgaacctaa cagagggaaa cacagcagcc
      841 cagcctcctg ccagagggct tggcaagggt gtgtggaata gaggagccgg gaaccttcag
      901 gatggaggca ctccagctcc cccggcttcc aaggactgcg gctgccatag agagcacatt
      961 aacgccggga cttggtgtac ctcctctcac catgtccaga ggcctgagcg ctgggcctgt
     1021 ggagggaaga gaggagaggc cagcgggagg gatggctgtt ccctgaataa acctcattta
     1081 tttaaaaaaa aaaaaaaaaa
//
