LOCUS       NM_001100452            6217 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus BRD4 interacting chromatin remodeling complex
            associated protein like (Bicral), mRNA.
ACCESSION   NM_001100452 XM_001001238 XM_006523980 XM_924235
VERSION     NM_001100452.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6217)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6217)
  AUTHORS   Gatchalian,J., Malik,S., Ho,J., Lee,D.S., Kelso,T.W.R.,
            Shokhirev,M.N., Dixon,J.R. and Hargreaves,D.C.
  TITLE     A non-canonical BRD9-containing BAF chromatin remodeling complex
            regulates naive pluripotency in mouse embryonic stem cells
  JOURNAL   Nat Commun 9 (1), 5139 (2018)
   PUBMED   30510198
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6217)
  AUTHORS   Alpsoy,A. and Dykhuizen,E.C.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
REFERENCE   4  (bases 1 to 6217)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 6217)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Hara,Y., Nagase,T.,
            Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: I. The complete nucleotide sequences of 100 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 9 (5), 179-188 (2002)
   PUBMED   12465718
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT030702.11.
            
            On or before Nov 4, 2022 this sequence version replaced
            XM_006523980.5, NM_001100452.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029927.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                CT030702.11        37549-37607
            60-105              CT030702.11        38867-38912
            106-154             CT030702.11        39750-39798
            155-223             CT030702.11        39883-39951
            224-1897            CT030702.11        43740-45413
            1898-2003           CT030702.11        55825-55930
            2004-2104           CT030702.11        57839-57939
            2105-2163           CT030702.11        60237-60295
            2164-2309           CT030702.11        61369-61514
            2310-2404           CT030702.11        62373-62467
            2405-2507           CT030702.11        63209-63311
            2508-6217           CT030702.11        68034-71743
FEATURES             Location/Qualifiers
     source          1..6217
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..6217
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /note="BRD4 interacting chromatin remodeling complex
                     associated protein like"
                     /db_xref="GeneID:210982"
                     /db_xref="MGI:MGI:2673855"
     exon            1..59
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            60..105
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..3289
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /note="GLTSCR1-like protein"
                     /codon_start=1
                     /product="BRD4-interacting chromatin-remodeling
                     complex-associated protein-like"
                     /protein_id="NP_001093922.1"
                     /db_xref="CCDS:CCDS50126.1"
                     /db_xref="GeneID:210982"
                     /db_xref="MGI:MGI:2673855"
                     /translation="MDDDDDSCLLDLIGDPQALNYFLHGPSSKSGSDDVTNAGYSAAN
                     SNSIFANSTNADPKSALKGVSDQLGEGPSDGLPLASSLQFLEDELESSPLPDLSEDQP
                     FDILQKSLQEANITEQTLAEEAYLDASIGSSQQFAQAQLHPSSSASFTQASNVSNYSG
                     QTLQPIGVTHVPVGASFASNTVGVQHGFMQHVGISVPSQHLPNSSQISGSGQIQLIGS
                     FGNQPSMMTINNLDGSQIILKGSGQQAPSNVSGGLLVHRQTPNGNSLFGNSTSSPVAQ
                     PVTVPFNSTNFQASLPVHNIIIQRGLAPNSNKVPINIQPKPVQMGQQSAYNVNNLGIQ
                     QHHAQQGISFAPTSSPQGSVVGPHMSVNIVNQQNTRKPVTSQAVSGTGGSIVIHSPMG
                     QPHTPQSQFLIPTSLSVSSNSVHHVQAINGQLLQTQPSQLISGQVASEHVMLNRNSSN
                     MLRTNQPYSGQMLNNQNTAVQLVSGQTFATSGSPVIVNHASPQIVGGQMPLQQASPTV
                     LHLSPGQSSVSQGRPGFATMPAVSGMAGPARFPAVSSASTAHPTLGPTVQSGAPGSNF
                     TGDQLTQANRTPAPVSVSHRLPVSASKSPSTLSNTPGTQQQFFCQAQKKCLNQTSPIP
                     TSKTTDGLRPSQIPGLLSTALPGQDSGSKIMPATLGATQAQPESSVGSSPSQTAVQVD
                     SHPGQKRPAAKQLTKGAFILQQLQRDQAHAVTPDKSQFRSLNDTVQRLLSYHVCQGSM
                     PTEEDLRQVDNEFEEVATQLLKRTQAMLNKYRFLLLEDAMRINPSAEMVMIDRMFNQE
                     ERASLSRDKRLALVDPEGFQADFCCSFKLDEAVPETPLDRSDQHRSKTSSLHQVPRAQ
                     SRDRAKPGMAEATNHDQFHLVPNHIVVSAEGNISKKSEGHSRTLKFDRGVLGQYRGPP
                     EDKGGRRDPAKVSRCSPGPEGHRKSLPRPDHGSESKLPGVLASSHMEMPCLDSFQDKA
                     LRNSPKNEVLHTDIMKGSGEPQPDLQLTKSLEKTFKNILELKNSGRPPSDPTASGAAD
                     LDFPSFSPMASQENCLEKFIPDHSEGVVETDSILEAAVNSILEC"
     exon            106..154
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            155..223
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            224..1897
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..2003
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            2004..2104
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            2105..2163
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            2164..2309
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..2404
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            2405..2507
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     exon            2508..6217
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6194..6199
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /note="hexamer: AATACA"
     polyA_site      6217
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; mKIAA0240"
                     /note="major polyA site"
ORIGIN      
        1 attccacgca tggcttgaaa tgggtgagaa gcagggttgc caggtgtcgg gtcactagtt
       61 tgtcatggat gatgacgatg actcctgtct cctcgatctt attggagacc cacaagcatt
      121 gaactatttt ctgcacggac ctagcagtaa atcgggcagc gatgatgtga cgaacgcagg
      181 gtattctgca gccaattcta attcaatttt cgccaactcc acgaacgctg accctaaatc
      241 ggccctcaaa ggtgtgagtg accagcttgg ggaggggccc agtgatgggc tgccgcttgc
      301 aagcagcctt cagtttcttg aagatgaact tgagtcttca cctctccccg atctcagcga
      361 ggaccaaccc tttgacattc ttcagaaatc cttgcaggag gctaatatca ctgaacagac
      421 attggcagaa gaggcgtacc tggatgccag tataggctca agccaacagt ttgcacaagc
      481 ccagcttcat ccttcttcat cagcatcctt tactcaggct tctaatgttt ctaattactc
      541 aggtcagaca ctgcagccta tcggggtgac tcacgtgcct gttggagcat cgtttgcaag
      601 caatacagtg ggtgtgcagc atggctttat gcaacacgtg gggatcagtg ttcccagcca
      661 gcatttgcct aacagcagcc agattagtgg ctccggtcag atacagttaa tcgggtcctt
      721 cggtaatcag ccttccatga tgactataaa taacctcgat ggctctcaaa tcatactgaa
      781 aggcagtggg cagcaagccc catctaatgt gagtgggggg cttctggttc acagacagac
      841 tcctaacggc aactctctgt ttgggaactc cacttccagt cctgtagcac agcctgtcac
      901 cgttccattt aacagcacaa atttccaggc atctttaccc gtgcataaca tcattattca
      961 aaggggtctt gcaccaaatt caaataaagt cccaattaat atccagccaa agccggtcca
     1021 gatgggtcag cagagcgcgt acaatgtgaa caaccttggg atccagcagc accatgccca
     1081 gcaggggatc tccttcgccc ccacaagctc gccccagggc tccgtggttg ggccgcacat
     1141 gtctgtgaac attgtcaacc aacagaacac gagaaagcct gtcacctcgc aggcagtgag
     1201 cggcacaggg ggcagcatcg tcatccattc ccccatgggc cagcctcaca ctccccaaag
     1261 tcagttcctt atacccacaa gcctttctgt cagctccaac tcggtgcacc atgtccaggc
     1321 tataaacggg cagctgcttc agactcagcc ctcccagctc atctctggcc aagtggcctc
     1381 tgagcatgtc atgctgaaca ggaattcctc taacatgctc aggaccaacc aaccatattc
     1441 cggacagatg cttaataacc agaataccgc cgtccagctg gtgtctgggc agacttttgc
     1501 cacctctgga agtccagtga tagtcaacca cgcctctcct cagatcgtcg ggggacagat
     1561 gcccttgcag caggcctcac ccaccgtgtt acacctgtca cctgggcaga gcagtgtttc
     1621 ccagggaagg ccaggcttcg ccaccatgcc cgcggtgagc ggcatggcag gacccgctcg
     1681 gttccccgcc gtcagctcag ctagcactgc tcatcctact cttgggccta cggtgcagtc
     1741 gggggcaccg ggatcaaact ttacgggaga ccagctgaca caagccaaca gaacgccagc
     1801 gcccgtcagt gtgtcccacc gtcttccagt ctctgcttcc aaatccccca gcaccttgag
     1861 caacaccccg gggacacagc agcagttctt ctgtcaggct cagaagaagt gtttgaacca
     1921 gacctccccc attcccacat ccaagaccac agacggcttg aggccatcac agatccctgg
     1981 gctcttgagc accgcactgc caggacagga ttctggaagc aaaattatgc cagcgacctt
     2041 gggggccaca caggcacaac cagaaagctc agttggatca tccccgagcc agacagctgt
     2101 gcaggtggat agtcatccag gacagaaaag gcctgctgcc aaacagctga ctaaaggagc
     2161 tttcatcctc cagcagttac agagggacca agcccatgct gtgacacccg acaaaagcca
     2221 gttccggtca ctaaatgaca cggtgcagag actgctctcc taccacgtgt gccagggctc
     2281 catgcccacg gaggaagacc tgaggcaagt ggacaatgaa tttgaagagg tcgccactca
     2341 gctcctcaaa aggacccaag ctatgctgaa caaatacaga ttcctgctcc tagaagacgc
     2401 catgaggatc aacccctctg cagagatggt gatgattgac aggatgttca accaggagga
     2461 aagagcttcc ctgtcgaggg acaagcgtct ggcgctcgta gatcctgagg gttttcaggc
     2521 cgatttctgt tgttccttca aacttgacga agctgtacct gagaccccgc ttgacaggag
     2581 tgaccagcat cgcagcaaaa ccagctcgct ccatcaggtg cccagggccc aaagcagaga
     2641 ccgagccaag ccaggcatgg cagaagcaac gaatcatgac cagtttcatc tagtgcctaa
     2701 ccacatcgtg gtctctgcag agggaaacat ttctaaaaag tcagaaggcc acagtagaac
     2761 actgaaattt gacagagggg tcttaggcca ataccggggt ccgcctgagg acaagggcgg
     2821 ccggagggac cctgccaagg tcagcaggtg ctctccgggc cccgagggcc accgcaaaag
     2881 cttgcccagg ccagatcacg gctctgagag caagctcccc ggcgtcctgg ccagctcgca
     2941 catggagatg ccctgtctcg actccttcca ggacaaagcg ctgaggaatt ccccaaagaa
     3001 tgaggtttta cacacagaca tcatgaaagg gtcgggtgag ccccagccag atctccagct
     3061 caccaagagc ctagagaaaa cctttaagaa catcctggaa ctcaagaact cggggcggcc
     3121 gccaagcgac cctacggcca gcggtgcggc ggacctggac ttccccagct tttctccaat
     3181 ggcttcgcag gaaaactgcc tagaaaaatt catcccggac cacagtgaag gcgttgtaga
     3241 aacggactcc attttagaag cagctgtaaa tagtattcta gagtgttaat agcagccgtc
     3301 ctcctccaga ccctgccccg gaccagttac actctctccc agcaaagcaa atggaaacgg
     3361 ctcccgtctg tctccagcct gcttggtcct ccatcacagg ttatcctttc taatctcacc
     3421 ctgttctttt gaagagcaat acatgtcgtc atggctgcgg ggagacccct cagtacaccc
     3481 acctctctct agaaagcagt ccgataggcc ctccacattt caagtgttac gaaagtgctt
     3541 acggccattg ttgttcgtta atttgttttg tggtttgttt cttagcactg tcgctcaaga
     3601 ccacagtaca cttggccctg ggtaaaattt tgacaatcat aagtcatttc aaaagaacag
     3661 acttattaaa gaaaaatcaa acaggactga tttaaagact ttctcactgc agctccaaag
     3721 tagtggtttg gttttgttct gttccagggg gagagggtat ctgcgtaggg aagactctcc
     3781 ctgaccagcc cgctgagtgg tgggtagccg gtgctctgcc tggaagccca ccgccctggc
     3841 taagacgcca ggagcacagc cacagagcat cctcctgaca tccagtgctg tgcgatgctg
     3901 caaaagcaaa gccttgtgtt tgtcttcaac acattcgtgc tgaattctgt ctgagaatgg
     3961 tctgttctta gccccaggtg tacgccctga aattctcaca ggctcactag ggaacagtgg
     4021 aagtcagttg taaggcagcg agttggggag gcaccggggt ctccgtgtat tccatcaact
     4081 taaaagaggt ttgcatttta taattgggtg aagtcaacat aacctatgtt ctttattatc
     4141 gctgaattct gttccattca acctcgttgt cccctttccc tcagccctta gccaagcatc
     4201 aaaaggcttt cacttaaaaa ctgtgttgta ctctttcagt tgaggctttt gaacgggact
     4261 ctggccttgt tcgtgagaat agtagtcaac agtatcagtc attcattccc aaacacagta
     4321 aaccaaaggt cacaaccagc aggccactga aggaaggaac cgaggcagga gacagggggc
     4381 catgtcctgg ccccgccccc gctgtgtgtg gtccagttca ccatagcgat cgagccttcc
     4441 tctttattat ttttgttcct ttccgggagt ggccctcatc cttccctctg tgcgggcctg
     4501 caccagggcg tgttctgttg ctacttgctt cttcctgtgt ggtaatggcc cacagtgctg
     4561 tgtctgcaac cctcctccca cgtctccatc aacctctggg atccagaggt agctttgatg
     4621 cctgtgaggg cttcctccct ctgttcatcc ccaggctgtg taaatgcatc cgttgatctc
     4681 ctctgcttcg ttataccccc aaaatggagt tgtccctatg gtcatcatgt agagtgtttc
     4741 ttttccagat tggcctgcaa tggaaaggaa ggcttttgat tttgattttt atcttttttt
     4801 cacataacac agcaacaatc taggcatggt ggcatacacc tgtaatccca acagtcaggt
     4861 gactaaagca ggagagtcac tggttcaagg ccagcttggg ctatataaca cacccctgcc
     4921 tcaaacacag aaggagagaa atttgagcaa tagcagactg tgtgggcctt ttttacccct
     4981 ctgtccacta cacaaaaaaa ctctgtgaga cagccagtct ttgagagcga tggaccttct
     5041 cccgcccaca gcccagccaa ccaaactaga agagtctggg ctgtcttcga gttgtccttt
     5101 tcttccttct ctgtgccaat gtccaagttg ctgacttcct tcctgtatta taacacatta
     5161 gaaagatgag ttgtttacca gttagacctc tgtctgggct gccctgatct ctctgtcaca
     5221 ggctcttctc atagccacat ggttaccatt caagatggcc cctggatgcc tgcagcacat
     5281 ggctactaat gaattacttt aattattgca aatcagtgga attctcaaga gacaagaaag
     5341 tctcgtgtat atttgttatc tcttccctcc ctccccagcc ccggccctgg ccctagtttt
     5401 ctctcctgtg tgtcaggtta cagggcttct caccatgaca ttagtcccac acaaggagag
     5461 cctactgtac caaaatgaaa cttgtaaatt tttgtgtcct tgtatgtaag tttacttttt
     5521 atggaggaaa gactctagat aatgacaaat gaagattaca aagtgtattt tactcctgtg
     5581 attaggttac accacatggg tcataactca ctcccgagcc cccactgctg aagggaagcg
     5641 ctctgcctca gtggccaacg ttggtggttc agggtcatta gtcagttgag ttctagaacg
     5701 cgtgctcagt aacaaaaaaa aaaaatcacc ttttcttccc tttgttttta atccgtttgt
     5761 tgttgtggaa aagtatgaat ttgttattac gcattgattt tctgtgtcct taagtactgc
     5821 ctaaagatga agcaaatttt gaactggcaa ttacgataag gaaacccttt agttctggag
     5881 actttagtag actctgttag attagggagg cctcacaggc tggccggctc caaggacggt
     5941 cactcactgt cagtgtggcg tggctttatt tgcttaaata ccttcatttg tatagtatgt
     6001 ctcacttgaa attgctttgt atacattttg taaaaatatt tataaaatgt tttgtaaaaa
     6061 aaaaaaaaag tataacaaat tgcagtttat tttgttatgt tggataaata ctgttaaacc
     6121 agtcagtacc tatattgtta atccatggtt agggtatgtt cagttggaga ttacaaaatg
     6181 aaacaaccat tgcaatacag ccaaagattt gggaaaa
//
