LOCUS       NM_001081418            5360 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus BRD4 interacting chromatin remodeling complex
            associated protein (Bicra), mRNA.
ACCESSION   NM_001081418 XM_986680
VERSION     NM_001081418.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5360)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5360)
  AUTHORS   Han,F., Yang,B., Chen,Y., Liu,L., Cheng,X., Huang,J., Zhou,K.,
            Zhang,D., Xu,E., Lai,M., Lv,B., Cheng,H. and Zhang,H.
  TITLE     Loss of GLTSCR1 causes congenital heart defects by regulating NPPA
            transcription
  JOURNAL   Angiogenesis 26 (2), 217-232 (2023)
   PUBMED   36745292
  REMARK    GeneRIF: Loss of GLTSCR1 causes congenital heart defects by
            regulating NPPA transcription.
REFERENCE   3  (bases 1 to 5360)
  AUTHORS   Gatchalian,J., Malik,S., Ho,J., Lee,D.S., Kelso,T.W.R.,
            Shokhirev,M.N., Dixon,J.R. and Hargreaves,D.C.
  TITLE     A non-canonical BRD9-containing BAF chromatin remodeling complex
            regulates naive pluripotency in mouse embryonic stem cells
  JOURNAL   Nat Commun 9 (1), 5139 (2018)
   PUBMED   30510198
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 5360)
  AUTHORS   Alpsoy,A. and Dykhuizen,E.C.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
REFERENCE   5  (bases 1 to 5360)
  AUTHORS   Hong,H.K., Chakravarti,A. and Takahashi,J.S.
  TITLE     The gene for soluble N-ethylmaleimide sensitive factor attachment
            protein alpha is mutated in hydrocephaly with hop gait (hyh) mice
  JOURNAL   Proc Natl Acad Sci U S A 101 (6), 1748-1753 (2004)
   PUBMED   14755058
REFERENCE   6  (bases 1 to 5360)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 5360)
  AUTHORS   Chae,T.H., Allen,K.M., Davisson,M.T., Sweet,H.O. and Walsh,C.A.
  TITLE     Mapping of the mouse hyh gene to a YAC/BAC contig on proximal
            Chromosome 7
  JOURNAL   Mamm Genome 13 (5), 239-244 (2002)
   PUBMED   12016511
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC148990.6.
            
            On Feb 6, 2007 this sequence version replaced XM_986680.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               AC148990.6         181321-181422       c
            103-148             AC148990.6         178478-178523       c
            149-191             AC148990.6         178328-178370       c
            192-257             AC148990.6         175007-175072       c
            258-2219            AC148990.6         169406-171367       c
            2220-2396           AC148990.6         168840-169016       c
            2397-3032           AC148990.6         161278-161913       c
            3033-3213           AC148990.6         160942-161122       c
            3214-3323           AC148990.6         160616-160725       c
            3324-3385           AC148990.6         158978-159039       c
            3386-3534           AC148990.6         157592-157740       c
            3535-3629           AC148990.6         157293-157387       c
            3630-3732           AC148990.6         157010-157112       c
            3733-5360           AC148990.6         153189-154816       c
FEATURES             Location/Qualifiers
     source          1..5360
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 8.67 cM"
     gene            1..5360
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /note="BRD4 interacting chromatin remodeling complex
                     associated protein"
                     /db_xref="GeneID:243842"
                     /db_xref="MGI:MGI:2154263"
     exon            1..102
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            103..148
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            149..191
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            192..257
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            258..2219
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            2220..2396
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            2397..3032
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3033..3213
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3214..3323
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3324..3385
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3386..3534
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3535..3629
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3630..3732
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            3733..5360
                     /gene="Bicra"
                     /gene_synonym="Gltscr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctggcccca caaaggacat tatcaaagtc cccagcctgg ggccctgtgt agacctggag
       61 tggccaccgc acccttccct tcatgattcg ttcatagcac agtggaaatg gatgatgagg
      121 atgggagatg cttactagac gtgatttgtg atcctcaggc cctcaatgat ttcttgcatg
      181 gatccgagaa gctggacagc gatgacctcc tggatgcccc tgtggaggcc caaagtgcct
      241 tctatgaagg tcctgggctc catgtgcagg aagctgccgc caaccaccta aaccctgagc
      301 ccagccagcc tgcccccagc gtggacctgg acttcctaga agatgatatc ttgggctccc
      361 ctgcagcagg aggaggtgga gggggcggcg gggccccaga ccagccctgt gacatccttc
      421 agcagagtct tcaggaggcc aacatcacag aacagaccct ggaggctgag gctgaactgg
      481 acctgggccc cttccagctg cccaccctac agcccgctga caatggggca ggtgctactg
      541 gagccgcagg agccacggca gtgactgcag gaccccaggc tctcttccca ggcagcgcgg
      601 atctgctggg gctgcaagcc ccgcccactg tactgaccca ccaggccctg gtgccacccc
      661 aggatgtggt caacaaggcc ttgagcgtcc agcccttcct gcagcctgtg ggcctgggca
      721 atgtgaccct tcagcccatt tcaggcctcc agggccttcc caatggcagt cctgggaatg
      781 ctgcagcagc caccttgggt ctgacaccta ttcaagtggt gggccagccc gtcatggctc
      841 tcaacccacc cacctcccag ctcttggcaa agcaggtacc tgtcagtggc tacctggcct
      901 cagcagctgg tccttcagag ccagtgacac tggcatctgc cggcgtgtcc ccccagggag
      961 ccggcctggt catccagaaa aatcttccag ccgcagtgac caccacactc aacgggaact
     1021 cggtgtttgc cgggacaggg gctgccactg cagcagccag tggggcaccc tcgggacagc
     1081 cgctggcggt ggccccgggc cttggcacat caccactggt acaagcaccc agtgtgattt
     1141 tacacagaac ccctacgcct atccagccca agcctacagg ggtcctgccc tccaaactct
     1201 accagctgac acccaagccc tttcccccta ccggagccac ccttaccatc cagggtgaac
     1261 caggcacctt gccccagcag cctaaggccc cccagaacct gacttttatg gccacgggca
     1321 aagctggcca gaatgtggtg ctgtctggct tcccggcacc ggctttgcag gcgaatgtgt
     1381 tcaagcagcc accagtcacc accacgggga cagccccgcc acagccacca ggggccctca
     1441 gcaaacccat gagcgtccac ctcctcaatc aaggcagcag catcgtgatc ccagcccagc
     1501 acatgctgcc tggccagaac cagttcttgc tgccaggcac cccagccgta caactccctc
     1561 agtcactctc tgcactgcct gccaacgtgg gaggccagat cctcacagct gcagcaccac
     1621 acgcaggtgg acagctcatt gccaacccta tcctcaccaa ccagaacctg gcaggcccac
     1681 tgagtctggg cccagtgctg gcaccccact ctggggcaca cagcgctgca cacatcctct
     1741 ctgcagctcc catccaggtg ggccagcctg ccctcttcca gatgcctgtg tcactggcca
     1801 ctggcagcct gcctactcag agccagccgg ctcccactgg ccccacagcc accaccgtcc
     1861 tccagggcgt caccctgcct cccagtgctg tggccatgct taacacgcct gatgggctag
     1921 tgcaaccctc cactccagct gccaccactg gggaggccac accagttctg gccgttcagc
     1981 ctgcaaccca ggtgccccct gctgtcacca caccactgcc tatgggtctc caacagccac
     2041 aggcacagca gcctccacag gtccctactc cacaggcggc cacccagcct caggccaccc
     2101 ctcctcaggc cagcccaagc ctggcttcca gcccagagaa gatagtcctg gggcaggcgc
     2161 cccctgcggc cacaacggcc atcctcactc aggattccct acagatgttc ctgccccagg
     2221 agaggagcca gcagcccctc tctacagagg gtccccacct ctcggtgcct gcctccgtca
     2281 tagtcagcgc cccgcctcct gcccaagacc cagccctggc cacgcccgtc accaaaggag
     2341 ctggcctcgg cgctcagacc ccggacagcc gggcttcccc agctccggct ccccagatcc
     2401 ctgcagctgc tccactgaaa gcccctggcc ccgcctcctc cccctcacta cctcaccagg
     2461 cccccctggg agacagtccc cacatgccct ccccacaccc tgccaggccc ccttcccgcc
     2521 caccctcaag accccactca cgccctccat cccagcccca gagcctgacc tgcccaccct
     2581 ctgagcccac cctgcaccct tgccctccac cccagggtcc cccaactcta cctggcatct
     2641 ttgtcatcca gaatcaattg ggcgccccac caccagccag caccccagcc tccacagccc
     2701 cgggcccacc ccagcctcct ctgcgacccc catcccagcc tccagagggc ccactgcccc
     2761 cagcctccca cctccctcct gcctccaccc cctcggccgt ggcctcctcc tctgagcctt
     2821 ctgccaggtt gccggtcccc acaccccctg acttccaact ccagttccca ccgagccagg
     2881 gaccccataa gtcccctact ccgccaccag ccctccacat ggtccctgag cccacggcac
     2941 cccctcctcc accacctcgg accttccaga tggtaaccgc ccccttccca gcgttgcccc
     3001 agccaaaagc acttctggaa cgattccacc aggtgccatc tgggattatt ctccagaata
     3061 aggctggggg tactcccacc accccacaga catccaccac cctggggacc ctcaccggtc
     3121 ctactgcctc tgtgctagtc agtggacagg caccacctgg gactcctgcc gcctctagcc
     3181 atgtcccagc ctccacacct atggccacca caggcctccc tcctctactt cctgccgaaa
     3241 acaaagcttt tgccagcaac cttccaaccc tgagtgtggc caaagctacc gtgtctgggc
     3301 cagggaagcc cccagcaatt cagtatgaca gcaagttgtg tagcttgaag aaacagcccc
     3361 tactgcaacc cagcaaagaa gcctgcttcc tggagcatct gcacaaacac cagggctctg
     3421 tcctgcaccc cgattacaag acagccttcc cctcctttga ggacgccctc catcgcctcc
     3481 tgccctacca tgtctaccaa ggcgccctcc cctcccccaa cgactaccat aaagtggatg
     3541 aagaatttga gactgtctct acgcagctgc tcaaacgcac ccaggccatg ctcaataaat
     3601 atcggctttt gcttctggaa gagtccagga gagtcagtcc ttctgcggag atggttatga
     3661 tcgaccgaat gttcattcag gaggagaaga ccacccttgc cttggataag cagcttgcca
     3721 aggagaagcc tgatgagtac gtgtcttcct cccgctccct tggcttccct gtcccagtgt
     3781 cttccgaggg ccaccggctc cccagccatg gccagtcgtc ttcatcctcc acatctggaa
     3841 cgtctgccca gccccctcct catctgccca ccaagctagt gatccggcac ggtggggccg
     3901 gcggctctcc ctcagtgacc tgggcccggg catcctcctc cttgtcatcc acttcctcat
     3961 cctcctcctc atcctctgct gcctcatccc tggacgcaga tgaggacggc cccatgccca
     4021 cccgtaaccg gccacccatc aagacctatg aggcccggag ccgcattggt ctcaaactca
     4081 agatcaaaca agaggcgggg ctcagcaagg tggtgcacaa cactgcactg gatcctgtgc
     4141 atcagccctt gccggctcca accccagcga aaggggcgga gcctccgcca cacccagctc
     4201 cgcccccact ccctcctgct acccaggcgc agatgaatgg cactctggac catcccccac
     4261 ccgcagtacg caaacccacg gtgcctgcgt cctgcccacg tctaccacta cgcaagacct
     4321 accgagaaaa catgggcaat cctggtgccg ccgagggtgc acagggacgg ccgcggggtg
     4381 cgggcagccc caccccactg cccaccaagg tagacgaagc caccagtggg ctgatccggg
     4441 agctggcagc ggtggaggat gaactatatc agcgggttct gaagggcggc ccaccacccc
     4501 cggagactcc agcctccgct accagccagg gccccactga acccagttgg gaagcacccg
     4561 tgctaccccc agccaaacga cgcaagtctg agtccccgga cgtggaccag gccagcttct
     4621 ctagtgacag cccgcaggat gatacactta ctgagcattt gcagagtgcc atcgacagca
     4681 tccttaacct gcagcaggcc cccggccgga cacccgcagg cccatacccc catacggggc
     4741 ccacgcctgg cacccccaca tccccagcgc ccctgcacag gcctgacgcc ttcccaccct
     4801 ctagtcacaa tggtggcctc ggtgccagga cgttgaacag ataacaccgg gctgcttctg
     4861 cagccctcat agagtgcccc caaccccact tccaggagag cagcctgacc gccgacctcc
     4921 acctctaagg ggcactaacc cagttcccct gacaattctt gcctaagtta ttttgagtca
     4981 caaaggcctc cccaccttcc tgcttccacg ttggctagag atttggaatg gggcgtgggt
     5041 tttctagggg aaggtgggct ataaggtaca acgtccccct ggcacaagcc aggacagggg
     5101 atacatgagt gttgcctagg actgggcttc taggttgatg cactggtaac atctgaaaac
     5161 aaggtcttgt ctgattggct tcgtggatca ctgtccgggg cactcagagc cgggagagat
     5221 cttctgaaag gctcaactct catcctgttg cccacagagc ctgaaagatt aggaagcaag
     5281 gactcaagcc agtgtcccaa agtacctaca tcccatccat acgtgcactc accggagtca
     5341 tcctgtgtat gtgtgcgtgc
//
