LOCUS       NM_001080808            3041 bp    mRNA    linear   ROD 07-FEB-2025
DEFINITION  Mus musculus BICD family like cargo adaptor 1 (Bicdl1), transcript
            variant 1, mRNA.
ACCESSION   NM_001080808 XM_132372 XM_913948 XM_991835
VERSION     NM_001080808.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3041)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 3041)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 3041)
  AUTHORS   Nakano,Y., Jahan,I., Bonde,G., Sun,X., Hildebrand,M.S.,
            Engelhardt,J.F., Smith,R.J., Cornell,R.A., Fritzsch,B. and Banfi,B.
  TITLE     A mutation in the Srrm4 gene causes alternative splicing defects
            and deafness in the Bronx waltzer mouse
  JOURNAL   PLoS Genet 8 (10), e1002966 (2012)
   PUBMED   23055939
REFERENCE   5  (bases 1 to 3041)
  AUTHORS   Schlager,M.A., Kapitein,L.C., Grigoriev,I., Burzynski,G.M.,
            Wulf,P.S., Keijzer,N., de Graaff,E., Fukuda,M., Shepherd,I.T.,
            Akhmanova,A. and Hoogenraad,C.C.
  TITLE     Pericentrosomal targeting of Rab6 secretory vesicles by
            Bicaudal-D-related protein 1 (BICDR-1) regulates neuritogenesis
  JOURNAL   EMBO J 29 (10), 1637-1651 (2010)
   PUBMED   20360680
  REMARK    GeneRIF: BICDR-1 has an important role as temporal regulator of
            secretory trafficking during the early phase of neuronal
            differentiation
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC139562.8 and GU973876.1.
            
            On Oct 14, 2017 this sequence version replaced NM_001080808.1.
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU973876.1, BC024804.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                AC139562.8         131711-131772       c
            63-431              GU973876.1         1-369
            432-433             AC139562.8         131340-131341       c
            434-3041            GU973876.1         372-2979
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 56.1 cM"
     gene            1..3041
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /note="BICD family like cargo adaptor 1"
                     /db_xref="GeneID:75665"
                     /db_xref="MGI:MGI:1922915"
     exon            1..500
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..1796
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /note="coiled-coil domain-containing protein 64A; bicaudal
                     D-related protein 1; BICD-related protein 1; coiled-coil
                     domain containing 64"
                     /codon_start=1
                     /product="BICD family-like cargo adapter 1"
                     /protein_id="NP_001074277.1"
                     /db_xref="CCDS:CCDS39230.1"
                     /db_xref="GeneID:75665"
                     /db_xref="MGI:MGI:1922915"
                     /translation="MSAFCLGLAGRASAPAEPDSACCMELPAGAGDAVRSPATAAALV
                     SFPGGPGELELALEEELALLAAGERSSEPGEHPQAEPESPVEGHGPPLPPPPTQDPEL
                     LSVIRQKEKDLVLAARLGKALLERNQDMSRQYEQMHKELTDKLEHLEQEKHELRRRFE
                     NREGEWEGRVSELETDVKQLQDELERQQLHLREADREKTRAVQELSEQNQRLLDQLSR
                     ASEVERQLSMQVHALKEDFREKNSSTNQHIIRLESLQAEIKMLSDRKRELEHRLSATL
                     EENDLLQGTVEELQDRVLILERQGHDKDLQLHQSQLELQEVRLSYRQLQGKVEELTEE
                     RSLQSSAATSTSLLSEIEQSMEAEELEQEREQLRLQLWEAYCQVRYLCSHLRGNDSAD
                     SAVSTDSSMDESSETSSAKDVPAGSLRTALNDLKRLIQSIVDGVEPTVTLLSVEMTAL
                     KEERDRLRVTSEDKEPKEQLQKAIRDRDEAIAKKNAVELELAKCKMDMMSLNSQLLDA
                     IQQKLNLSQQLEAWQDDMHRVIDRQLMDTHLKEQSRPAAAAFPRGHGVGRGQEPSTAD
                     GKRLFSFFRKI"
     exon            501..716
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            717..833
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            834..980
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1160
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1379
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            1380..1510
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            1511..1631
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     exon            1632..3026
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3006..3011
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /note="hexamer: AATAAA"
     polyA_site      3026
                     /gene="Bicdl1"
                     /gene_synonym="2210403N09Rik; BICDR-1; Ccdc64"
                     /note="major polyA site"
ORIGIN      
        1 cgccttgcag cctggcgcgc gccggccggg ccgcaccgct gcgggctcgg cgcgcgcggg
       61 ccatgtccgc cttctgcctg ggcttggccg gccgagcttc agcacccgcc gagccggaca
      121 gcgcctgctg catggagctg cccgctgggg ccggggacgc agtccggagt cccgccactg
      181 ctgccgccct cgtctccttc cccggaggtc ccggggaact ggaactggcc ttagaggagg
      241 agctggcgtt gctggcggcc ggggagcggt cgtccgagcc cggcgagcat cctcaggcgg
      301 agccggagtc tccggttgag gggcacgggc cgccgctgcc gccgccgcct acccaggatc
      361 ccgagctgct gtcggtgatc cgccagaagg agaaggatct ggtgttggcg gcccgactag
      421 gcaaggcgct gctcgagagg aaccaggaca tgagccggca gtacgagcag atgcacaagg
      481 agctgacgga caagctagag cacctagaac aagagaaaca tgaactgaga aggcgattcg
      541 agaatcgaga aggggagtgg gaaggacggg tgtctgagct ggagacggac gtgaagcagc
      601 tacaggatga gttggagagg cagcagctcc accttcggga agcagaccga gaaaaaacac
      661 gagctgtcca ggaactgtca gaacagaacc agaggctgct ggaccaactc agcagggcat
      721 ctgaagttga gagacagctc tccatgcagg tccatgctct caaagaagac ttccgggaga
      781 aaaattcctc caccaaccag catatcatcc ggctggagag tctgcaggcc gagatcaaga
      841 tgctgtcaga tcgaaaacgg gagctggagc atcggctcag cgccaccttg gaggagaatg
      901 acctgcttca agggactgtg gaggagctgc aggaccgggt gctgatccta gaaaggcagg
      961 gccatgacaa agacctacag ctgcaccaaa gccagctgga gctccaggag gtgcggctgt
     1021 cctaccggca gctgcagggc aaggtggagg aactcacgga ggagaggagt ttgcagagct
     1081 cggctgcgac cagcacgtcc ctgctgtcag agatcgagca gagcatggag gccgaggagc
     1141 tggagcagga gagagagcag ctgaggctgc agctctggga agcctactgc caggttcgat
     1201 atctctgctc acacctccga gggaatgaca gtgccgactc agccgtatcc acagactcct
     1261 ccatggacga gtcctcggag acctcgtcgg ccaaggacgt gcctgccggc agcctgcgca
     1321 ctgccctcaa cgatctcaag aggctgatac agagcatcgt ggacggtgtg gagcccacgg
     1381 tgacactgct gagcgtggag atgaccgcac tgaaggagga aagggaccga ctcagagtga
     1441 cctctgagga caaggagcca aaggagcagc ttcagaaggc catcagggac cgggacgagg
     1501 ccattgccaa gaagaacgct gtggagctgg aactcgccaa gtgcaagatg gatatgatgt
     1561 ctctgaacag ccagctactg gatgccattc agcaaaaact gaacctctct cagcagctgg
     1621 aggcttggca ggatgacatg cacagggtca ttgacaggca gctgatggac acgcacctga
     1681 aggaacagag ccggcctgct gctgctgcct tccctagggg ccacggcgta gggcgggggc
     1741 aggaacccag caccgcagat ggcaaacggc tcttctcctt cttcaggaag atttaggtgg
     1801 ggaggagtct ggccattgag aagggaggac tagtggcagt ctgaaaaggt tcccccttag
     1861 ctggagcagg gcagccacac tgcctgccca cctgccctgg agcccagtta gctccagaga
     1921 gctcactccc tatgtcaatg taatggagac tgagaggtag gggggcctgc cttgtcctct
     1981 gaaggctgcc cctcaccaag ggacaggaac aaacctgtcc ccactgccca agccaagcct
     2041 cagcctgggc tttcccagga tcctgttagt gagcagggct cagccactca gacccagctg
     2101 accacagtcc accctaaagg ctctgctgcc tccttggaat ttgaacatgg ggaagagatt
     2161 ggggcctcct gtgcatgcct caggaggcct gagcctccac tcgagcctca gccaccagcc
     2221 tggaataggg gaggcacggc ccctcacccg tgtgcatgca cctctgctgg agccctgcac
     2281 agcaggaggc ccagcctgtg gctatgaggc ctaagaacca ggtgtacaag ctctgttgag
     2341 gccatcctgt accccaggga aggccatctt ctggctgcca ccactcctca gcttcctcca
     2401 gtgcagtcct tatccctagg gaagcctggg ccgggcagca ttcccattgc ccctgtaggc
     2461 tttagcctcc agacttcccc cgtcatggga caggacttgt cttccacagc accctcccac
     2521 ctcagatgca acttcttggc caacccgagc aagttgaggc cacaagagca gcctgagggg
     2581 cctggttctc ccaccctcac actgaaggca gcgtgggtgc cacagggtgg atggggtgag
     2641 gctgctggga gcctccagat actgcccacc aggcctctaa gagacaaagc cctaagcctg
     2701 ctgcttctgc tccttctgca gcagccccct ccccatctct gctgaggccc cagcccagag
     2761 gctgtgggcc cggcctgcag ctgctcacca ctctctgagc ctcctgccct ccacgggaaa
     2821 agcacagcag ggctgagcgg aaagaatgta cttatagata tgtacatacc acagtgctgt
     2881 aattttgtat gtagcaattg tgtaaataca cgtatggatt ttataataca cacatataaa
     2941 tctataaagg catattttta gaaaaacagc gcaccactgc ttcttttgaa aatagtctga
     3001 ataagaataa aatgaatttc tacagaaaaa aaaaaaaaaa a
//
