LOCUS       NM_026279               1826 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus BEN domain containing 5 (Bend5), transcript variant 1,
            mRNA.
ACCESSION   NM_026279
VERSION     NM_026279.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Choi,E., Lee,J., Oh,J., Park,I., Han,C., Yi,C., Kim,D.H., Cho,B.N.,
            Eddy,E.M. and Cho,C.
  TITLE     Integrative characterization of germ cell-specific genes from mouse
            spermatocyte UniGene library
  JOURNAL   BMC Genomics 8, 256 (2007)
   PUBMED   17662146
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK075885.1 and AL669965.13.
            
            On Jun 23, 2010 this sequence version replaced NM_026279.2.
            
            Transcript Variant: This variant (1) encodes the functional
            protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK075885.1, AK167425.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1451              AK075885.1         1-1451
            1452-1826           AL669965.13        22506-22880
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 51.53 cM"
     gene            1..1826
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /note="BEN domain containing 5"
                     /db_xref="GeneID:67621"
                     /db_xref="MGI:MGI:1914871"
     exon            1..395
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             170..1435
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /codon_start=1
                     /product="BEN domain-containing protein 5"
                     /protein_id="NP_080555.1"
                     /db_xref="CCDS:CCDS18472.1"
                     /db_xref="GeneID:67621"
                     /db_xref="MGI:MGI:1914871"
                     /translation="MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGP
                     EELGAEPESPPRAPRDWGALLLHKAQILALAEDKSDLENSVMQKKIKIPKLSLSHVED
                     DGEVKDYGEEDLQLRHIKRPEGRKPSEAAHKSIEAVVARLERQNGLSLGHSTCPEEVF
                     VEASPGTEDMDSLEDAVVPRALYEELLRNYQQQQEEMRHLQQELERTRRQLVQQAKKL
                     KEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRSTFSEEA
                     NTSSYYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWG
                     TDVLKNRSVTGVATKKKKDAIPKPPLSPHKLSIVRECLYDRIAQETVDETEIAQRLSK
                     VNKYICEKIMDINKSCKNEERREAKYNLQ"
     exon            396..529
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            530..914
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1063
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1277
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1826
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1431..1436
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1455
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /note="major polyA site"
     regulatory      1800..1805
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1826
                     /gene="Bend5"
                     /gene_synonym="2310026E23Rik"
ORIGIN      
        1 agccgattgg cagagcgggg ctttcaggaa caataacagt ggggggagcc ggggccccgg
       61 ggagcctccc cgcccccggc ccggctgcgg ctcacgcccc tctaggggtc cccacctccg
      121 caccgcccca cgggctgacc ggcgcccggg cccgcccccg gcgcccacca tgtacgcctt
      181 tgtgcggttc ctggaggaca acgtctgcta cgcgctgccc gtgtcgtgcg tgcgcgactt
      241 cagtccccgc tcgcgactgg attttgacaa ccagaaggtg tacgcggtgt accggggccc
      301 ggaggagctg ggcgccgagc ccgagagtcc cccgcgtgcc cctcgggact ggggcgcgct
      361 gttgctccac aaggcccaga tcctggcgct ggcagaagac aaatctgacc ttgagaacag
      421 tgtgatgcag aagaaaataa aaatccccaa actttctctc agtcatgtag aagatgatgg
      481 ggaggttaaa gactatgggg aagaagattt acagcttaga cacatcaaga gaccggaggg
      541 gcggaagcct agtgaagcgg ctcacaagag tatcgaggca gtggtggccc ggctagagag
      601 acagaacggc ctgagcctgg gccacagcac ttgtccagaa gaggtctttg tggaggcctc
      661 accgggcaca gaggacatgg acagtctgga ggatgctgtc gtgccccggg ctctgtatga
      721 ggagctgctg cgaaactacc agcagcaaca agaggagatg cgccacctcc agcaggagct
      781 ggagcggact cggaggcagc tcgtacagca ggccaagaag ctcaaggagt acggggcatt
      841 ggtgtctgaa atgaaggagc tccgagacct caacaggaga ctccaagatg tgctactcct
      901 gcggcttggc agcggtcccg ccattgactt ggaaaaagta aagtcagaat gtctcgagcc
      961 cgagccggag ttacggagca ctttcagtga ggaagcaaat acgtcgtcct attaccccgc
     1021 tcctgcgcct gtcatggaca agtatatcct agacaatggc aaggtccatc tgggaagcgg
     1081 gatttgggtt gatgaggaga aatggcacca gctacaagtt acccaaggag attctaagta
     1141 cacgaagaac ttggcagtca tgatctgggg aacagatgtt ctgaaaaaca gaagtgtcac
     1201 aggagtcgcc acaaaaaaaa agaaggatgc aatcccaaag ccacccctct ctcctcacaa
     1261 gctcagcatc gtcagagagt gtttatatga cagaatagca caagaaacgg tggatgaaac
     1321 ggaaattgca cagagactct ccaaagtcaa caagtacatc tgtgagaaaa tcatggatat
     1381 caacaaatct tgtaaaaatg aagaacgaag ggaagcaaaa tacaatttgc aataaacttt
     1441 aaattttttt cataaggcct ttgcattttt tttgtgtgtg gtgtatgcat ttcaggtgat
     1501 ggtgccatcc aaatagacta caccagacat ggctgtgtct gggcaggggg ccttcagggc
     1561 actgaggtca gtgtcttatt ctgaatttgg acttcctact tcgaagaagg cagatggatt
     1621 cactgagact cagcatgagg ctcagtacga gcctcatgcc attgccagtg ttgttatgga
     1681 acgggaaaag cacttttcgc agggctgtaa agcatcagag tagcctgtcg ggaccacaat
     1741 acgaactgtt atttttacca tcggaggata tctctctctg ctcctctatt ttgttctata
     1801 ataaaattcc attaattctt gatgta
//
