LOCUS       NM_001164806            7935 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus BEN domain containing 4 (Bend4), mRNA.
ACCESSION   NM_001164806 XM_001477289
VERSION     NM_001164806.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 7935)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
REFERENCE   2  (bases 1 to 7935)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122562.8.
            
            On Oct 11, 2009 this sequence version replaced XM_001477289.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and homology support by the related
            human gene, GeneID 389206.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.1099415.1,
                                           SRR7345562.2900180.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-734               AC122562.8         55058-55791
            735-1301            AC122562.8         64835-65401
            1302-1390           AC122562.8         77338-77426
            1391-1631           AC122562.8         82556-82796
            1632-7935           AC122562.8         84407-90710
FEATURES             Location/Qualifiers
     source          1..7935
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 36.06 cM"
     gene            1..7935
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /note="BEN domain containing 4"
                     /db_xref="GeneID:666938"
                     /db_xref="MGI:MGI:3648414"
     exon            1..734
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /inference="alignment:Splign:2.1.0"
     exon            735..1301
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /inference="alignment:Splign:2.1.0"
     exon            1302..1390
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1631
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /inference="alignment:Splign:2.1.0"
     exon            1632..7935
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /inference="alignment:Splign:2.1.0"
     regulatory      7911..7916
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /note="hexamer: AATAAA"
     polyA_site      7934
                     /gene="Bend4"
                     /gene_synonym="D330027G24Rik; EG666938"
                     /note="major polyA site"
ORIGIN      
        1 cctccaggca ttggcgaggc gggctgtcaa tcagcgctgg gcggcagccc cccgcgcggg
       61 ggctcggaga tgccaggctc ggcgacaggc agcggcggcg gcggcggcca cggcgcagac
      121 acacgccttc ccgccggcgc gcgccggggt agagcaggcg gccgggcggc cgagccacct
      181 ccggagccgc gcgcggggcg ggcagggcct cagactcggc atggagcccg agatgcaggc
      241 ggcggaggag gggcccagcg cgccccgcat ctacaagcag cgcggcccct acagcgtcct
      301 caagacgttc cccagccggc ggccggcgct ggccaagcgc tacgacagac cctctctgct
      361 cgagctgtcg cccgcgcggc cgtccccgct gccgccgccg ccgccgccgc cgcccttcgc
      421 ctcgctcgcc gccgtgccca tcagcagcag cgagccgccg ccgttcccga cgcagccgtc
      481 ctacccggcc gggtcaggcc gggcccccgc cgccgccgcc gcctcgtcgt cgtcgccgtc
      541 ctgcacaccc gccgcgcccc cgggccatcc caggactccg gcgccaccgc cgccgccgcc
      601 tccgccgctc gcggcccccg ccgcctcgtc gtcgtcgtcc ttcgccgccg tcgtcaggta
      661 cggccctggc ccggcgaccg gcgcttgcag cagcggcgcg ggtagcgacg gcgccagcct
      721 ggagctcagt gcagagagcc ggatgatcct ggatgccttt gcccaacagt gcagtcgtgt
      781 tcttagtctc ttaaactgtg gaggaaaact tctggactcc aaccactctc aatccatgat
      841 ttcttgcgtc aagcaggaag gctctagtta taatgaaaga caggaccagt gtcacattgt
      901 gaaaggggtc cagagtcaga cctctgacaa catagacata gaaatgcaat atatgcaaag
      961 aaagcaacaa acttctgcct ttttgagagt gttcactgac tctctccaaa attatctgct
     1021 ctcggggagc ttcccgactc caaacacctc atcagccagt gagtatggcc acctggctga
     1081 tgtggaccct ctctcagcct ccccggtgca caccttaggt ggctggacct ctccggcaac
     1141 atctgagtct cacggtcacc catcctcctc tacgctgccg gaggaggaag aggaagagga
     1201 agaagaaggc tactgccctc gatgccagga gctggagcag gaggttatct cgttgcaaca
     1261 agaaaatgaa gagctcagaa gaaaattaga gagcatccca gtgccctgcc agaccgtcct
     1321 cgattacctg aagacagtgc tgctgcacca caaccagctc ctgccgcagc ccgccgagca
     1381 gcccaccgag ggaagcaagc agctgttgaa caactaccct gtgtacataa cgagcaaaca
     1441 gtgggacgag gccgtgaact cctccaagaa ggacgggcgg cggctcctgc gctacctcat
     1501 cagatttgtc ttcaccacag atgagcttaa gtactcatgc ggccttggga aaaggaaaag
     1561 gtcagtgcag tcaggagaga caggtcccga aagacgccct ctggatccag ttaaagtcac
     1621 gtgcctccga gaattcatta ggatgcactg tacctcaaac cctgattggt ggatgccctc
     1681 ggaggagcag ataaacaaag tgttcagcga tgctgtaggt catgcccgac aggggcgggc
     1741 cgtggggact ttcctgcaca acggtggctc gttttatgaa gggatggatc accaggcttc
     1801 ccaggatgag gtcttcagca agacacagga cggatctggg gactagtgga cacaatcgtc
     1861 ccagtgctgt gtggtttctt gtgtaagagc tccagttgtg aatgtccatt cccatgtcac
     1921 ttagagtcca aagcatgtaa ttccgtcaca ctttacacat tctcggactt aaaactcttg
     1981 acccactgcc acagttccca aacaggaatc cactttagga ttttcggggg ggaaatctct
     2041 agcacctgca gtagatttgg ggtgtgttat atcacagagg aaaatgtaca tttggcatga
     2101 agtcatttct agctaggcat tgagggtgtc tccagtccca gatcttcagg gaagcctggc
     2161 cccctgagca gagctggtct ccagggaagg ctcagttagt gttcctgcac atgggcgaag
     2221 ggaagacgag caactgtaac aagtaagctg tcttcgattt cctaagactt catttcagag
     2281 ttcccagcaa agacacaagc taggtgacac tgtaagcctc catccgtttt aaacgctgac
     2341 gggaagaatc cagaacagag gccatgtcta tagagagcgc gtaggtgtgg acgtcggcta
     2401 ctttttctgt taccttacag acagaactca ctgtgtccat cagaagggca acctcctcgc
     2461 tgtggttgac aagcaggaga ttctctttat atctttagga aacatccaaa gattgaaaac
     2521 cattttccaa tgcctcgttt cataagttcc taacgcacag cttccgtagc cttaagtcat
     2581 acttcgttga cacagtgccg gggtggtggg ttcagcgaga actcccacaa gctggctgtt
     2641 gagtaagatc aaacgcaggg catgaacgac ggcatctgct gttgatcagg ggtctggtat
     2701 tgtagacgtg gagcgtcaag gccgttctga caactatgca atggctggtg ggtgatttct
     2761 ctgaaatttg aggcctttgc tgggctgagt gaaggtttag catatataaa acttctgttt
     2821 cccattgtca tggatgaaaa cgccccatcc agctgtgcac atcctcctcg gtctaagctc
     2881 tgagttaccc ttctgcttcc ctgcttaatt tgtggaatcc gtatgtgagg ttagtgatgc
     2941 cctgggaacc acttcctagt aaaggctaca gaggtgctat aattgttact gatggagatt
     3001 acgctttgga cctgcggaga acactggctt tattaaacaa atcaagatta ctatgttctt
     3061 tgtggaacca aaagctaaat gggcagcgtt tgtgaaaatt atgagtgtca tctacaaaca
     3121 cagcaaagag ctttgaaaat ggggtagaaa ttcagactgt gagtatccgt ttagaaagga
     3181 cttttgggga ggccagtttt gtcagaataa tcacgcatcc tttagattca atatttagca
     3241 aatattgaac aaatcagctg aacagtttag aagtaaaaga aattaaatgg gtaaatgagc
     3301 tgtcatttac agtggaccca agaccagtgt ctttggctgt ccaagagaaa gggttgtttg
     3361 tttgtttgtt tgttttttcc taactataaa aactgtctcc ggataacatc caggatagca
     3421 ttaatgttga tagcttcttg ctggtctggg gcactcacta tcatcttgtt aaaatcctca
     3481 tctgtagcac cgaagacttc tcatactgct gtttatctgc tctgctgagt cccgttcctc
     3541 tctttggtgg tttatttagt cagtaagctt ggacaagctt cccttggttg tcttgtagtc
     3601 tttaaatgat ccatcgagtt ttctcttcca cgagtttgca acttttacat taagtttggg
     3661 aagttagcag gagctagcct cagggcctta gagccttagc ataaggaatc agacagtccc
     3721 catggagagg cctgagttcc tcctccacct ctttaaaggc tctgatctca acaccaactc
     3781 tgggtagcat catgccctgg gacaagcctt tgtcaatgca gcttctaatt gtcatctctg
     3841 cataggcgga cattagcttt agttgactaa gagcctgtat caccttcact atcaaatgta
     3901 gctttaagga agggggtatc taaatcattt gtgggtacac ctacaccaag ggttcttgcc
     3961 acttgcttca gatgtgcaga gggcacccgc tgcttcctgt actgtattgc aaggtctgga
     4021 tgataataat aagaagtgca gtggactact gatgagctgt tgtcaattac atctggagca
     4081 ttcgttcaat atgatgttga aaggggtgtt tcttgtgtgt gatccaaggt ctgggaagtc
     4141 tggcctagga aatctccagt gtcgggaacc tagctgttgt gcatatgtgg aaactaagga
     4201 ctacaatgct gacctccgcc gtagcagttc tcacatgtaa ttacatgagg gcctagaatt
     4261 agcctagtca agtgtccctt ttttctgcct gcttatgtga ttgctgtttt cttcagctta
     4321 gtttaccacc tgataccagc agtcaaacac ttaggattgt ttcagccttc tgctggctct
     4381 ttccctgtgt gggcatccat ttaaggctgg ggtgctactc aagtcatagt ggtttcctgt
     4441 gtggtcccct gactattaag tcagcctgca aaaggtgccg cttctggcag aactccctgt
     4501 taaagctgac taccctgatt tccccacatg ccttgagttt gttgtctaga ggtctgaaga
     4561 tgttgtcaaa ttgacttggt ttgcttttcc acgtcattct ggcagtcaga cacattgttt
     4621 tcgtgatgca aaacctagtc ctctgtcaac ttttagaatt accctgagcc gttcagcgtt
     4681 ggttggaagt agacttgagt taaaaatatc tcaggatgca gctgtgccct gtcattggtg
     4741 aggaaaatgt ggttgccggg ctggtgtaac tgaatgtggc gttttcgtca gtgattgggt
     4801 aggtccggag tcccagtgtc caaggctcga tagttcacag tggtgctttc ctggtgtatc
     4861 cttcattttc gaaattaaaa tgcctgcttc tcacaagtgt ttaacctcag gcacagatct
     4921 tgccaagaga atgatggccc tggaatgagc tgtcagggga ctgagaccag ggacctgtgg
     4981 aggggagcag agttttacat ttgataaggc cccatttctc atcagcccat ttgtgggtgt
     5041 tgagcctctc gtggtatcaa gaaaagtgta gctgtttcta caagtcctta gccctgttcc
     5101 tcgtcggtca cagcatttag gggactgtca ccatgtgttt cctaaggctt ccctatggta
     5161 gagagtggag gagtaaaagc atgctgatct cttggtcagg tggtgaggga agcgcgtgcc
     5221 tctgccagtc gctagtgggc tgttcctgta gactgcccct tacccttcag tgatctgcac
     5281 cgaggccatg ccttcgtcag gatgacaagg agacaggtta ctgcagtctt acttggtgca
     5341 gctggatgca tggcatcagg tggtcggcac tggcacaatt ggattgtggt tttctctcag
     5401 tccagtaatg attcttgaat gatttgctgt caacacaaaa tctaaacaat aactcctaaa
     5461 cttaggaatc tgcaggtgtg tggtttctgc gtatccctgc catttaatga cttgtgcctc
     5521 ttctgcaact gagaaagtgg acaaaactcc tgggaaggtg tgaattatgt ccagaacgca
     5581 aacatgaccc tcatttgagt tctgtgtttt gcggtacagg gagtcaacca tgtatgtgct
     5641 ctagactagc cctgataccc actggctacc tccttagttt ctctatagat cagttgactt
     5701 tttttttttt tttttttttt tttgtagttt gaaggtcatt tttggtgact tagaatttga
     5761 agtgtataat ttcctcagtg cggtatcatc tcgcagtaca ggtctgtgtt agtctgtgac
     5821 agctttcaca tgtgggtttg tagaaatgta atggaaagtg ggtttgcaca taccgtgtga
     5881 gtcttcctgc tgtgtgctta atgtggcaac acttgccaaa gctgcttggc aaacacgtca
     5941 aaagggatgc ttgagtcaca gctctaatgc aaatgtgtcg caacagcagt gtgtgtcatt
     6001 atgatgtatt tctgtaaaca cagtgatggc tcctttcagt catataagta ctggataaaa
     6061 ataaccactt gaaacattgg agggaaatgt cacttaactg atggcaaagc tactcgcatt
     6121 atcagccagg ggcttctgtg tgtgtttgtg tttgtgtgtg tgtgtgtgtg tgtgtgtgtg
     6181 tgtgtgtgtg tgtgtgcgcg cgcgcgtgca cacaaaatgg agaaggaaga actaacattg
     6241 gcaatgtgga gggcaaaagg aatacgccat cgaattagag gccacttgca ttccccacac
     6301 tatattggat tttaggaaat actgggagaa ctggaattcc cacactaaat tactggcctt
     6361 gtcagtttga ctactgaagg cactagatta ccaaaaattt ttgattctaa gcttcatagc
     6421 tgactgcaag ggctgtgttc ttcttgttga atcaccattc cccaaattgc aacaaaagta
     6481 catctgctag cgatacccat tcaaaaacct gggtcgctct gtacagtggc accaggacaa
     6541 gtggccagag gtgcctcagc gtgttgtagg atgacttggt cccattggaa atcactcgca
     6601 ccgcaatagt aactacagct acctaagtgt gactcttgac tcgtgtgtgc cggttgcttt
     6661 ggtaagcact ttaatgcatc ccccactctc ctcgtacctt ctcagctgcc ctaagctctt
     6721 cctgccgggc tactcacctg agcttccttt gagctccgta agcagaatgg ccgcttctgt
     6781 ttgccccagt caagcgtagt tctcaaaatc taccaacact ttgggaggga acattttttt
     6841 tgattttctg atgctatgaa gggaaagttg gtatttgtat cattaaatct gatttggaaa
     6901 tacacaggtg cttaagtaac aagcatgtac agcccaggcc tccagagctg tcaaagggct
     6961 ggcacgaagc ttggcctgac tgacaccttg tgagggagac cagaaactct taaagtggac
     7021 atatcagaag tctagttccc tccgcttttc tagattccct gtgcaaagat gcagggacat
     7081 aaaggacaac tttggatctc gtgattagat cgtcttacgt gacacctggt gacagccttg
     7141 gcgattggtc agggttccca tctctgtgtg gctggtttcg cagcccctgg tgacacttcc
     7201 aatttggtag gatggagagg ttttagtaga cgatgtcact gtgagaacta tagagattgt
     7261 gtaaagacta cagtgacctg ttgggtttgc ccctgtagtt caagacttaa catcctttga
     7321 aagcatgcca aggccaggtg agcctggcct gtgcctcttg ggagcaaggc ctgctggagg
     7381 caggcgggga actcagtcac tgtccagcct acccctgccc aggctaagcc ttgctttcat
     7441 gttgctcctc tgcagaacgg catgtagcag ctaacacggg ggccagttgc ctttactcta
     7501 ttttctatga tgaatacttg tggagaaact gtgacaaatc cattgatcct aatatttttt
     7561 attgttggag tcttgtggct tctcgaaata atttctattt gattgtactg tgtagaattc
     7621 atacacacta gggatatgtt aataaagcta aaatgcatag tataatatag aatagcaaaa
     7681 aaatttttgt gaacaattta tatagaagag taagttgttt tttaagtgtt aggccatttc
     7741 ttttaggaac ttaaaatgtt ataagagttt tttaaacatt caatattttt aattataaga
     7801 gacatttgtt actagagcta attatttcgg gtgttctaat tggaatattg atttttctta
     7861 cctcatatac ctctagaagg ccacatgttc tgttgggggt aaaattgcac aataaatgtc
     7921 aagttacctg ttaag
//
