LOCUS       NM_001358940            3392 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus Bclaf1 and Thrap3 family member 3 (Bclaf3), transcript
            variant 3, mRNA.
ACCESSION   NM_001358940 XM_006528900
VERSION     NM_001358940.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3392)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3392)
  AUTHORS   Murakami,K., Terakado,Y., Saito,K., Jomen,Y., Takeda,H., Oshima,M.
            and Barker,N.
  TITLE     A genome-scale CRISPR screen reveals factors regulating
            Wnt-dependent renewal of mouse gastric epithelial cells
  JOURNAL   Proc Natl Acad Sci U S A 118 (4) (2021)
   PUBMED   33479180
  REMARK    GeneRIF: A genome-scale CRISPR screen reveals factors regulating
            Wnt-dependent renewal of mouse gastric epithelial cells.
REFERENCE   3  (bases 1 to 3392)
  AUTHORS   Chakraborty,D., Paszkowski-Rogacz,M., Berger,N., Ding,L.,
            Mircetic,J., Fu,J., Iesmantavicius,V., Choudhary,C.,
            Anastassiadis,K., Stewart,A.F. and Buchholz,F.
  TITLE     lncRNA Panct1 Maintains Mouse Embryonic Stem Cell Identity by
            Regulating TOBF1 Recruitment to Oct-Sox Sequences in Early G1
  JOURNAL   Cell Rep 21 (11), 3012-3021 (2017)
   PUBMED   29241531
  REMARK    GeneRIF: lncRNA Panct1 maintains mouse embryonic stem cell identity
            by regulating TOBF1 recruitment to Oct-Sox sequences in early G1.
REFERENCE   4  (bases 1 to 3392)
  AUTHORS   Cox,B.J., Vollmer,M., Tamplin,O., Lu,M., Biechele,S.,
            Gertsenstein,M., van Campenhout,C., Floss,T., Kuhn,R., Wurst,W.,
            Lickert,H. and Rossant,J.
  TITLE     Phenotypic annotation of the mouse X chromosome
  JOURNAL   Genome Res 20 (8), 1154-1164 (2010)
   PUBMED   20548051
REFERENCE   5  (bases 1 to 3392)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672284.15.
            
            On Dec 14, 2017 this sequence version replaced XM_006528900.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219382.2989.1,
                                           SRR1660813.186352.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               AL672284.15        129565-129732
            169-245             AL672284.15        145136-145212
            246-869             AL672284.15        148648-149271
            870-1520            AL672284.15        150141-150791
            1521-1696           AL672284.15        152372-152547
            1697-1811           AL672284.15        154340-154454
            1812-1875           AL672284.15        155232-155295
            1876-1991           AL672284.15        156735-156850
            1992-2106           AL672284.15        163325-163439
            2107-2202           AL672284.15        164816-164911
            2203-2355           AL672284.15        171842-171994
            2356-2381           AL672284.15        188229-188254
            2382-3392           AL672284.15        188968-189978
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 73.55 cM"
     gene            1..3392
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /note="Bclaf1 and Thrap3 family member 3"
                     /db_xref="GeneID:382252"
                     /db_xref="MGI:MGI:2685992"
     exon            1..168
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            169..245
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..2361
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /note="isoform 3 is encoded by transcript variant 3;
                     uncharacterized protein CXorf23 homolog"
                     /codon_start=1
                     /product="BCLAF1 and THRAP3 family member 3 isoform 3"
                     /protein_id="NP_001345869.1"
                     /db_xref="GeneID:382252"
                     /db_xref="MGI:MGI:2685992"
                     /translation="MARSRSRSPRWKQRSLSPQSRNFEYHEERHFHGHYDPEYRHDQQ
                     RPFTWRMDDEKHGQNKPRIPPRVNSYHRSYVNRSPSPNVKPVEKFDTYKPHQEYFPGR
                     GDDDRRSQYMPTYTESAATYMEHERDCYIPTVQGRYTPDDHRGRGRGSGRGEKPPQMS
                     LGKPPKMSLGKPPQMSLADSLRFKEKWHEDELRHQRVQEESYPQSPRRGSEDFGTRNP
                     FQKRYPEDHDFRKYGYTSKRPTDAARYENRDPARIPKWKPEHSFLPFQEKKEEWSFGA
                     QGHRYTEREYPERSSTTRVSYDYRHKHHKLSESEQDFPDGRFHKHLKEEDRKYSSIKA
                     PANRELDCFSTTRGREIENEQINGPFYLYNKNSVSYNHTNIKDADLEPCNDKWKKKIS
                     KEDCRKENASFSKQFDTSPKPEEKCYSLIKKKPLSVKVDRNKTDTFRSTSRYSAERQI
                     SHDLVAIGKTSDNFHPVFQHLDSTQNPENKPTEEFAQEIITLIHKVKADSFVTPDITL
                     NERFSRIKNRQDADFNQTKSNSDPEFHRRIDMSLDDFQNKYTMVYEPDKTLVKVIEPN
                     DLRHDIERRRKERLQNEDENIFHMASPTERNHQSPSFSKVKTIRADGFQKPPHFIKSN
                     FRKFIQKPYINYTMQRKDAIDQKIFRVEENHQNRRGSKGSFKNFLGGRFQPHYKSHLV
                     QKSMYIQAKYQRLRFAGPRGFITNKFRNRFLRKKKF"
     exon            246..869
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            870..1520
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            1521..1696
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1811
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            1812..1875
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            1876..1991
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            1992..2106
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            2107..2202
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            2203..2355
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            2356..2381
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     exon            2382..3392
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3352..3357
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /note="hexamer: AATAAA"
     polyA_site      3385
                     /gene="Bclaf3"
                     /gene_synonym="2310067E24Rik; A830080D01Rik; Gm1146"
                     /note="major polyA site"
ORIGIN      
        1 gggtcccggc ccgcggggag agctgggtgc tggttggagc aggaggcggg agctgcgcga
       61 cgggcgaggc ggtgagggag cagcaacagc ggcggcggct gtagcggcgg aggcttcggc
      121 gacggcgaca gcgacagcga cgggctctgg tgacgacttc tctgagggtg taaaaagtgg
      181 atcaggcagc tcatatgcta aaggatggca cggtcaagat ccagatcccc caggtggaaa
      241 caaaggtcat tatcgccaca atctagaaat tttgaatacc atgaggaaag acatttccat
      301 gggcactatg accctgaata tagacatgat caacaaagac cctttacttg gagaatggat
      361 gatgaaaaac atggacaaaa taaaccaagg attccccctc gtgtgaattc gtatcatcgg
      421 tcttatgtaa atagatcacc ttctccaaat gtaaaacctg ttgaaaaatt tgatacatat
      481 aagcctcacc aagaatattt tcctggcaga ggagatgatg acagacgatc tcagtatatg
      541 cccacataca cagaaagtgc agcaacctac atggagcacg aaagggattg ttatatccct
      601 acagtgcaag gaaggtatac tcctgatgat cacagaggta gaggtagagg aagtgggaga
      661 ggagagaagc cacctcagat gtcactgggg aagccaccta agatgtcact ggggaagcca
      721 cctcagatgt cactggcaga ttccttgaga tttaaagaga aatggcatga agatgaattg
      781 agacaccaga gggtacaaga agaaagctac cctcagtcac ccagaagagg ctcagaagac
      841 tttggcacaa ggaacccttt tcaaaagagg tatcccgagg atcatgattt cagaaagtat
      901 ggctacacat caaaaagacc tacagatgca gcaaggtatg aaaatagaga tccagccaga
      961 atcccaaagt ggaagcctga gcattctttt ctacctttcc aagagaagaa agaagagtgg
     1021 agctttggag cccaaggtca cagatatact gagagagagt acccagagag aagctcgaca
     1081 accagagtat cctacgacta ccgtcacaaa catcataagc tctcagagag cgagcaggac
     1141 tttcctgatg gcagatttca caagcactta aaggaagaag acagaaaata cagttctata
     1201 aaagctcctg caaatagaga gttagattgt ttcagtacta caagaggaag agaaattgag
     1261 aatgagcaaa tcaatggacc tttttatctc tacaacaaaa actctgtttc ctataatcat
     1321 acaaatataa aggatgctga tttggagcct tgcaatgaca aatggaagaa aaaaattagt
     1381 aaagaagatt gcagaaaaga gaatgcatct tttagtaaac agtttgatac aagcccaaaa
     1441 cctgaagaga aatgctattc acttatcaag aagaaaccac tttctgtcaa agtagacaga
     1501 aacaagacag acacatttag gtctacttct agatattctg cagagagaca gatatcacat
     1561 gatttggttg ctattggcaa aacaagtgac aattttcatc cagtatttca acatcttgac
     1621 tcgactcaga atcctgaaaa taaacctact gaagaatttg ctcaggaaat cataacacta
     1681 atccacaaag ttaaagcaga tagttttgta acacctgata ttactctaaa tgaacgtttc
     1741 tcaagaataa aaaacagaca ggatgcagat ttcaatcaaa cgaaatcaaa ttcagatcca
     1801 gaatttcaca ggcgaataga tatgtctttg gatgattttc agaataaata tacgatggta
     1861 tatgaaccag ataagactct ggtcaaagta atagaaccaa atgatctacg acatgacatt
     1921 gagagaagga gaaaagagcg attacagaat gaagatgaga atatttttca catggctagt
     1981 cctacagaga ggaatcatca gtctcccagt ttttcaaagg tgaagactat tcgtgctgat
     2041 ggatttcaaa agcctccaca ttttataaaa tcaaatttta gaaaatttat tcagaaacct
     2101 tacataaact atactatgca gagaaaagat gccattgatc agaagatatt tagagttgag
     2161 gaaaatcatc agaacagaag aggctctaaa ggatctttta agaacttttt gggtggcaga
     2221 ttccagcctc attataaatc acacctggta cagaagagca tgtatattca ggctaaatac
     2281 cagcgcttac ggtttgctgg accaagagga tttattacca ataaattcag aaacagattt
     2341 ctgaggaaaa aaaagtttta atgtaagagc ctagttaaaa ggaataccca gtattgccaa
     2401 ggacaaacaa cctggaattg ttgcaagtgg agccaaccct atatgaagac ttaactgagc
     2461 atctcatttt tgtcaggaat tggaattgac actaatactg taactttctt gataaaatat
     2521 ctttattttt cagtagtgga atgctgcaac ttttttacag tattcaattt cagaagttgt
     2581 atttaactac aagctctttt gcaaaaactc tcagcagaag catttgaggg gcactctttg
     2641 ttgatgcatc tttctctcag catggtttca ctgagagaat ttaattaaat tacatgtaaa
     2701 catttatatg ttgaaagctt tctgttataa gaacaggtgt cagaattatt tagtgtctgt
     2761 acatgaaaga acttttaaac agtggcctta cagtatcaaa ttttatactg gcttttcttt
     2821 ttctgatgac attttggctt ctaacttgaa gttttctgaa gtttctgaag atcaaggcct
     2881 gtatgtgtca tccattttgt aatacaatat aagaagctta aagaagaggt gcatcttctc
     2941 catcgggtcg tgtgtatctt gggttttccc atgaccattt gctcttttct agtttcaaat
     3001 gctattgtgg aaaatatgta aggattttat aatctctatt ccatcttctt ttccctcagg
     3061 gcaagcttat gcatattata tttttaaagg cttttaaaat ctgacagaca aaactgcata
     3121 tttgaacatt gtactttact actacggtat tagacatttt gcagacacat cttacagaca
     3181 gcatatcttt ggttcagttg atagatattt catatctact atgtgtaaga taggatccat
     3241 gggatcgtaa atacagtcta taggtccaaa aacttctttg ttttctttct tctgcttaaa
     3301 agtacatata cattcccagt caaatttttg tgacatgttt atttgtaaga aaataaaata
     3361 ttgttctttc tgcttgaagc tgttacctgg ca
//
