LOCUS       NM_029850               3809 bp    mRNA    linear   ROD 07-FEB-2025
DEFINITION  Mus musculus B cell CLL/lymphoma 7A (Bcl7a), mRNA.
ACCESSION   NM_029850
VERSION     NM_029850.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3809)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3809)
  AUTHORS   Siguero-Alvarez,M., Salguero-Jimenez,A., Grego-Bessa,J., de la
            Barrera,J., MacGrogan,D., Prados,B., Sanchez-Saez,F.,
            Pineiro-Sabaris,R., Felipe-Medina,N., Torroja,C., Gomez,M.J.,
            Sabater-Molina,M., Escriba,R., Richaud-Patin,I.,
            Iglesias-Garcia,O., Sbroggio,M., Callejas,S., O'Regan,D.P.,
            McGurk,K.A., Dopazo,A., Giovinazzo,G., Ibanez,B., Monserrat,L.,
            Perez-Pomares,J.M., Sanchez-Cabo,F., Pendas,A.M., Raya,A.,
            Gimeno-Blanes,J.R. and de la Pompa,J.L.
  TITLE     A Human Hereditary Cardiomyopathy Shares a Genetic Substrate With
            Bicuspid Aortic Valve
  JOURNAL   Circulation 147 (1), 47-65 (2023)
   PUBMED   36325906
  REMARK    Erratum:[Circulation. 2023 Jan 17;147(3):e63. doi:
            10.1161/CIR.0000000000001129.. PMID: 36649398]
REFERENCE   3  (bases 1 to 3809)
  AUTHORS   Xin,Y., He,Q., Liang,H., Zhang,K., Guo,J., Zhong,Q., Chen,D.,
            Li,J., Liu,Y. and Chen,S.
  TITLE     m6A epitranscriptomic modification regulates neural
            progenitor-to-glial cell transition in the retina
  JOURNAL   Elife 11, e79994 (2022)
   PUBMED   36459087
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3809)
  AUTHORS   Wischhof,L., Lee,H.M., Tutas,J., Overkott,C., Tedt,E., Stork,M.,
            Peitz,M., Brustle,O., Ulas,T., Handler,K., Schultze,J.L.,
            Ehninger,D., Nicotera,P., Salomoni,P. and Bano,D.
  TITLE     BCL7A-containing SWI/SNF/BAF complexes modulate mitochondrial
            bioenergetics during neural progenitor differentiation
  JOURNAL   EMBO J 41 (23), e110595 (2022)
   PUBMED   36305367
  REMARK    GeneRIF: BCL7A-containing SWI/SNF/BAF complexes modulate
            mitochondrial bioenergetics during neural progenitor
            differentiation.
            Erratum:[EMBO J. 2024 Oct;43(19):4437-4438. doi:
            10.1038/s44318-024-00157-7.. PMID: 39223333]
REFERENCE   5  (bases 1 to 3809)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3809)
  AUTHORS   Battaglioli,E., Andres,M.E., Rose,D.W., Chenoweth,J.G.,
            Rosenfeld,M.G., Anderson,M.E. and Mandel,G.
  TITLE     REST repression of neuronal genes requires components of the
            hSWI.SNF complex
  JOURNAL   J Biol Chem 277 (43), 41038-41045 (2002)
   PUBMED   12192000
REFERENCE   7  (bases 1 to 3809)
  AUTHORS   Klochendler-Yeivin,A., Muchardt,C. and Yaniv,M.
  TITLE     SWI/SNF chromatin remodeling and cancer
  JOURNAL   Curr Opin Genet Dev 12 (1), 73-79 (2002)
   PUBMED   11790558
  REMARK    Review article
REFERENCE   8  (bases 1 to 3809)
  AUTHORS   Zhang,H.S., Gavin,M., Dahiya,A., Postigo,A.A., Ma,D., Luo,R.X.,
            Harbour,J.W. and Dean,D.C.
  TITLE     Exit from G1 and S phase of the cell cycle is regulated by
            repressor complexes containing HDAC-Rb-hSWI/SNF and Rb-hSWI/SNF
  JOURNAL   Cell 101 (1), 79-89 (2000)
   PUBMED   10778858
REFERENCE   9  (bases 1 to 3809)
  AUTHORS   Phelan,M.L., Sif,S., Narlikar,G.J. and Kingston,R.E.
  TITLE     Reconstitution of a core chromatin remodeling complex from SWI/SNF
            subunits
  JOURNAL   Mol Cell 3 (2), 247-253 (1999)
   PUBMED   10078207
REFERENCE   10 (bases 1 to 3809)
  AUTHORS   Wang,W., Xue,Y., Zhou,S., Kuo,A., Cairns,B.R. and Crabtree,G.R.
  TITLE     Diversity and specialization of mammalian SWI/SNF complexes
  JOURNAL   Genes Dev 10 (17), 2117-2130 (1996)
   PUBMED   8804307
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY271432.1, BC046777.1 and AC113504.10.
            
            On Aug 26, 2009 this sequence version replaced NM_029850.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC038481.1, AK044782.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               BY271432.1         1-198
            199-2664            BC046777.1         29-2494
            2665-3809           AC113504.10        127577-128721
FEATURES             Location/Qualifiers
     source          1..3809
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 62.92 cM"
     gene            1..3809
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /note="B cell CLL/lymphoma 7A"
                     /db_xref="GeneID:77045"
                     /db_xref="MGI:MGI:1924295"
     exon            1..274
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..815
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /codon_start=1
                     /product="B-cell CLL/lymphoma 7 protein family member A"
                     /protein_id="NP_084126.1"
                     /db_xref="CCDS:CCDS19661.1"
                     /db_xref="GeneID:77045"
                     /db_xref="MGI:MGI:1924295"
                     /translation="MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLR
                     IYKWVPVTEPKVDDKNKNKKKGKDEKCGSEVTTPENSSSPGMMDMHDDNSNQSSIADA
                     SPIKQENSSNSSPAPETNPPVPSDGTEAKADEAQADGKEHPGAEDASEEQNSQSSMEN
                     SVNSSEKAERQPSAESGLAAETSAVSQDLEGVPPSKKMKLEASQQNSEEM"
     exon            275..356
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            357..453
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            454..621
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            622..743
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            744..3809
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3783..3788
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3808
                     /gene="Bcl7a"
                     /gene_synonym="4432415N06Rik"
                     /note="major polyA site"
ORIGIN      
        1 ttgcgcactg ggccccgggc gcgcggcggc accaggcttt gtgtgtgcgc gtatgtgtgt
       61 gagtgtgtgt ctgtgcgcga gtgagagagc gggcgagtgt ggcgagcagg acccggcggg
      121 cgcgctcccc cagcctccct ctctctctct ctttcctctc tctctccctc cccgccagaa
      181 ccatgtcggg caggtcggtt cgagccgaga ccaggagccg ggccaaagat gatatcaaga
      241 gggtcatggc ggctatcgag aaagtgcgca aatgggagaa gaaatgggtg accgttggcg
      301 atacatccct acgaatctac aagtgggtcc ctgtgacgga gccaaaggtt gatgataaaa
      361 acaagaacaa gaagaaaggc aaggacgaga agtgtggctc ggaggtgacc actccagaga
      421 acagctcgtc tcctgggatg atggacatgc acgatgataa cagcaaccag agctccatag
      481 cagacgcctc ccccatcaag caagagaaca gcagcaactc cagccctgcc ccagagacca
      541 acccacccgt gcccagcgat ggcaccgaag ccaaggctga tgaggcgcag gccgatggaa
      601 aagagcaccc tggagctgaa gatgcatccg aggagcaaaa ttcacagtct tcgatggaaa
      661 actcggtgaa cagctccgag aaggcagaac ggcagccatc tgcagaatca gggttagcgg
      721 cagaaacgtc ggcagtctct caggatttgg aaggagtgcc gccgtctaaa aagatgaagc
      781 tggaagcctc tcaacagaac tcagaagaga tgtagacggc ccggcggaac cttctggtcc
      841 atgtttcatg gcaggtacat cggcaggctt aattctagaa acacggccca agcgactcct
      901 cttgggcgcg agcagaacta acgtttcaag tttactaaag tgcaaatcca agaagaacct
      961 agagcggcgg cggcagcgga acttcgcaga cacttgacgg actctgccgt gaaaccgaaa
     1021 cactcgaacc ttcaagtgac tgccctctgg gaggtgggtc gacagctcag gagtgtgtgc
     1081 gcactgtctc ggaagccaag attacatttg tgttgctgct gtatccccct cccctcactt
     1141 ctctatttaa cgatataagc tattcgaggg tggtaccaat caggaatttg ctttccatag
     1201 gggcttttgg ctcttcaacc aattccttct gctttctttt tttgtgcctt gtaccctaga
     1261 ggtgacctcc ggcatgcttc ctggtttttg catctctcct ggcaaagtgc ccacttgttt
     1321 tggttggctg ctgcccccac ccccacccct tattgcctct ctcctccctg ccccaagact
     1381 gcttcaaagc aagcagggta gagcggcggg agaccaggca cctttcagtg acccccttgg
     1441 ttcaggtgag cagtgtttgg gcacaccctg agccccaact tccagggccc ctggggctac
     1501 aagtttgcgg gggccggttt cccgagggct ggcctccttg gtcaggacac gccctcacct
     1561 tttggagcca tggaggctag gcgtttgcaa ggcaaggtag cccagattga catgcaaaag
     1621 cctttagatt tttctggcac ttccacccta tctcccctcc gccccctaac ctcacacccc
     1681 gactctggcc acaactggca ctgcgctctc caggtcctcc gaagacgaaa tgaccaactg
     1741 agcttgtctc cttaggatag taaagggctg ggaggttggg agccggcggc cggcaggaat
     1801 agctggtgct gaactaactc tcccatagga cattgcttgg atttcaaatc catggtaacc
     1861 tgctgccctt tgtccctgtc tcctatccac cgcaccccaa gccccccaaa accccaggca
     1921 ggatgcgcct ggtatggcct gactctgaga ggctacaggt ggatggagac ccattcccag
     1981 taccgcgctg ttggtctcct ctggggaccg gaccttaacc attgggcctc aggccagaag
     2041 caaggcacag aggaaccggg aagatttgca cacagatttg cccccccaga aaggagcctc
     2101 cgaggcactt ccttcccctg ctcttccttg cacggagaca gctctctctc actcagtgga
     2161 gacgccactt ggacagacgg actgctcagc tgttgatttc tgaggcctgg tttgctctta
     2221 atccctttgc tggacccctc agatctgaaa accttcccct atgctttctt actgcactgg
     2281 agttcgaact ccctatgagt tgtgtgttgg ggggaggggc gggcggggtg ggttttgttt
     2341 ttttgttgtt cttgtttcgt tttgtttcgt ttgctaattg gtgcatattc aggtaccacc
     2401 ttttgacgtg tggatctttc tccaaaccac cacaagaagt gtctgccggg ctccgttttc
     2461 taagagtttc tgaggggaca gctcccattt ctttttttgg tttcaaggga gctgtctatt
     2521 tcctatactt caagaagaat caaaatgttc ctgaatttta aatacctcat gcaaaaatat
     2581 ctcctgaaat aagggaaaaa aaaaaaactt tgaaaaatcg taatgttgaa gttagcgatg
     2641 ctaaaatgtt tctgtcttaa aaaacaaaaa aattgttgta atacttagcg attttgcccc
     2701 tcaggcggtc agttctgtcc agaactgtgt tctgcgtctt ggcccggaag caaccggatg
     2761 catgacctct gaacggatct caaggccaag gcatctttac ctccagattc tagagttagg
     2821 gcaacaacag ttttcttttg cagcaaaact ccgttctggt gaaagatgaa tttggatatt
     2881 tatttctttt tctgggaaac aagaggttaa acaacgtaag cagctgaggg agaacccaac
     2941 acgggcatcc acggaaccag cgggcgcggc cagggccgcc tatacctctt ctaccctccg
     3001 cagcctctct ggacagtcag gaggagtcga tacagttgag aaagaagaca acgatgaggt
     3061 tcgaggtacc gaggctgtca ttagtttttc tctgaagtgc ctgaacgtag gaatgggccg
     3121 tcgacggagg ggaccattcg gatgttcccc cacctcgcga cggccgcgcc aggcaaagag
     3181 ccagcagccc tgcactccac actggccagg aaaagccttc cacgaggagc ggtcagactg
     3241 caaaatccaa tgtgcttcct tccccgccac ggtcctctct ctctctcggg gagccgatgg
     3301 tccccgtccc tgaaccccct agcccgcatc cccaccacag aatctaagac ctttcatctg
     3361 gccgagccag gggcaaaggg gatcctaagc aaatgccttc cgtggacaac aggccccacg
     3421 gcctaaaggg ctcccagggc aaactttccc ccaacacttg aaggggggtg ggggggatgg
     3481 cggctacaca ttccactaag tgcagcactc gcacccacaa cccggaagga aggctcttaa
     3541 gcgattctca gagggtggtg actgcccatc atcgtcagac ggtgtcgtgg tttggaatgt
     3601 taattatcgc agaggacctg gtagaggtat aaagaccttt tttcactgtt acctaatttt
     3661 ttttttcctc ttacaatttt ttttttggtg tgttgtacag cagtataatt tttcacttat
     3721 ttattccatc ggtagatatt gtttgtacaa tgtacaatgg tttcatttca gaaaataata
     3781 ataataaaaa aaaaagttct gatcatgag
//
