LOCUS       XM_017313114            1238 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus branched chain ketoacid dehydrogenase E1,
            beta polypeptide (Bckdhb), transcript variant X2, mRNA.
ACCESSION   XM_017313114
VERSION     XM_017313114.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017313114.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1238
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..1238
                     /gene="Bckdhb"
                     /gene_synonym="BCKDE1B; BCKDH E1-beta"
                     /note="branched chain ketoacid dehydrogenase E1, beta
                     polypeptide; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 ESTs, 380 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12040"
                     /db_xref="MGI:MGI:88137"
     CDS             113..958
                     /gene="Bckdhb"
                     /gene_synonym="BCKDE1B; BCKDH E1-beta"
                     /codon_start=1
                     /product="2-oxoisovalerate dehydrogenase subunit beta,
                     mitochondrial isoform X2"
                     /protein_id="XP_017168603.1"
                     /db_xref="GeneID:12040"
                     /db_xref="MGI:MGI:88137"
                     /translation="MDYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFP
                     AFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVV
                     IPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSD
                     VTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISH
                     EAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALR
                     KMINY"
ORIGIN      
        1 agctggcctg aaacctgctg tgtagacctt attggccttg agctcacaaa gatccatctg
       61 cttctgcttc ctgcatgctg gtattacagg tttctgtgac catgcctagc taatggacta
      121 tggaaaagat agagtgttta acaccccgtt gtgtgaacaa ggaatagttg gatttggcat
      181 tggaatcgcg gtcaccggtg ctacagctat tgcggaaatc cagtttgccg actatatttt
      241 ccctgccttt gatcagattg tcaacgaagc tgccaagtat cgctaccgct caggtgatct
      301 tttcaactgt gggagcctca ccatccgggc cccgtggggt tgtgtgggcc atggggctct
      361 ctaccattct cagagtcctg aagccttttt tgcccattgc ccagggatca aggtggtaat
      421 accccgaagc cctttccagg ccaagggact tctgttgtca tgcatagaag ataaaaatcc
      481 atgtatattt tttgaaccta aaatacttta ccgggcagca gtggaacagg tcccagtaga
      541 accctacaag atccccttgt ctcaggctga agtcatccag gagggcagcg atgtgactct
      601 ggttgcctgg ggcactcagg ttcatgtcat ccgggaggtg gcttccatgg cccaagaaaa
      661 gcttggagta tcttgtgaag tcatcgatct gcggacaatt gtgccttggg atgtggatac
      721 agtttgcaag tctgtgatca aaaccgggcg actgttgatc agccacgagg ctcccttaac
      781 aggcggcttt gcctctgaga tcagctccac ggtccaggaa gaatgtttct tgaacctaga
      841 ggctccaata tctcgagttt gcggatatga caccccgttt cctcacatct ttgagccctt
      901 ttatatccca gacaaatgga agtgctacga tgcccttcgc aagatgatca actattgacg
      961 acagagaaaa ccaggaagat catgaccaga catggaaata tttttctgaa acctttttat
     1021 atttccttat acttctttct tcttacatat agttttatgc aacgaactgt catggatatt
     1081 ggctgatgag ctgcgaatta cttatcatgt taatataaat ggattgagtg cacaggagga
     1141 atgctttaag gagtgcgtgg gcggtgatct taagactgtt tcatgactat aaataccggg
     1201 tggtgttgta ttcaataaag ccaaattaca tcgcctca
//
