LOCUS       NM_030060                712 bp    mRNA    linear   ROD 18-MAR-2025
DEFINITION  Mus musculus basic leucine zipper transcription factor, ATF-like 3
            (Batf3), mRNA.
ACCESSION   NM_030060 XM_355268
VERSION     NM_030060.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Saeki,K., Pan,R., Lee,E., Kurotaki,D. and Ozato,K.
  TITLE     IRF8 defines the epigenetic landscape in postnatal microglia,
            thereby directing their transcriptome programs
  JOURNAL   Nat Immunol 25 (10), 1928-1942 (2024)
   PUBMED   39313544
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Santollani,L., Maiorino,L., Zhang,Y.J., Palmeri,J.R., Stinson,J.A.,
            Duhamel,L.R., Qureshi,K., Suggs,J.R., Porth,O.T., Pinney,W. 3rd,
            Msari,R.A., Walsh,A.A., Wittrup,K.D. and Irvine,D.J.
  TITLE     Local delivery of cell surface-targeted immunocytokines programs
            systemic antitumor immunity
  JOURNAL   Nat Immunol 25 (10), 1820-1829 (2024)
   PUBMED   39112631
REFERENCE   3  (bases 1 to 712)
  AUTHORS   Mickael,C., Sanders,L.A., Lee,M.H., Kumar,R.,
            Fonseca-Balladares,D., Gandjeva,A., Cautivo-Reyes,K., Kassa,B.,
            Kumar,S., Irwin,D., Swindle,D., Phang,T., Stearman,R.S.,
            Molofsky,A.B., McKee,A.S., Stenmark,K.R., Graham,B.B. and
            Tuder,R.M.
  TITLE     Classical dendritic cells contribute to hypoxia-induced pulmonary
            hypertension
  JOURNAL   FASEB J 38 (16), e70015 (2024)
   PUBMED   39212294
REFERENCE   4  (bases 1 to 712)
  AUTHORS   Rucker,A.J., Park,C.S., Li,Q.J., Moseman,E.A. and Chan,F.K.
  TITLE     Necroptosis stimulates interferon-mediated protective anti-tumor
            immunity
  JOURNAL   Cell Death Dis 15 (6), 403 (2024)
   PUBMED   38858387
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 712)
  AUTHORS   Ziblat,A., Horton,B.L., Higgs,E.F., Hatogai,K., Martinez,A.,
            Shapiro,J.W., Kim,D.E.C., Zha,Y., Sweis,R.F. and Gajewski,T.F.
  TITLE     Batf3+ DCs and the 4-1BB/4-1BBL axis are required at the effector
            phase in the tumor microenvironment for PD-1/PD-L1 blockade
            efficacy
  JOURNAL   Cell Rep 43 (5), 114141 (2024)
   PUBMED   38656869
REFERENCE   6  (bases 1 to 712)
  AUTHORS   Bar-On,L., Birnberg,T., Lewis,K.L., Edelson,B.T., Bruder,D.,
            Hildner,K., Buer,J., Murphy,K.M., Reizis,B. and Jung,S.
  TITLE     CX3CR1+ CD8alpha+ dendritic cells are a steady-state population
            related to plasmacytoid dendritic cells
  JOURNAL   Proc Natl Acad Sci U S A 107 (33), 14745-14750 (2010)
   PUBMED   20679228
REFERENCE   7  (bases 1 to 712)
  AUTHORS   Edelson,B.T., KC,W., Juang,R., Kohyama,M., Benoit,L.A.,
            Klekotka,P.A., Moon,C., Albring,J.C., Ise,W., Michael,D.G.,
            Bhattacharya,D., Stappenbeck,T.S., Holtzman,M.J., Sung,S.S.,
            Murphy,T.L., Hildner,K. and Murphy,K.M.
  TITLE     Peripheral CD103+ dendritic cells form a unified subset
            developmentally related to CD8alpha+ conventional dendritic cells
  JOURNAL   J Exp Med 207 (4), 823-836 (2010)
   PUBMED   20351058
REFERENCE   8  (bases 1 to 712)
  AUTHORS   McCartney,S., Vermi,W., Gilfillan,S., Cella,M., Murphy,T.L.,
            Schreiber,R.D., Murphy,K.M. and Colonna,M.
  TITLE     Distinct and complementary functions of MDA5 and TLR3 in
            poly(I:C)-mediated activation of mouse NK cells
  JOURNAL   J Exp Med 206 (13), 2967-2976 (2009)
   PUBMED   19995959
REFERENCE   9  (bases 1 to 712)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   10 (bases 1 to 712)
  AUTHORS   Hildner,K., Edelson,B.T., Purtha,W.E., Diamond,M., Matsushita,H.,
            Kohyama,M., Calderon,B., Schraml,B.U., Unanue,E.R., Diamond,M.S.,
            Schreiber,R.D., Murphy,T.L. and Murphy,K.M.
  TITLE     Batf3 deficiency reveals a critical role for CD8alpha+ dendritic
            cells in cytotoxic T cell immunity
  JOURNAL   Science 322 (5904), 1097-1100 (2008)
   PUBMED   19008445
  REMARK    GeneRIF: study describes a transcription factor, Batf3, that
            controls development of CD8+ dendritic cells; dendritic cells from
            Batf3-/- mice were defective in cross-presentation, and Batf3-/-
            mice lacked virus-specific CD8+ T cell responses to West Nile virus
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK020278.1.
            
            On Apr 6, 2007 this sequence version replaced NM_030060.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK020278.1, CB181953.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-712               AK020278.1         2-713
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 96.28 cM"
     gene            1..712
                     /gene="Batf3"
                     /gene_synonym="9130211I03Rik; Snft"
                     /note="basic leucine zipper transcription factor, ATF-like
                     3"
                     /db_xref="GeneID:381319"
                     /db_xref="MGI:MGI:1925491"
     exon            1..114
                     /gene="Batf3"
                     /gene_synonym="9130211I03Rik; Snft"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..402
                     /gene="Batf3"
                     /gene_synonym="9130211I03Rik; Snft"
                     /note="Jun dimerization protein p21SNFT; B-ATF-3"
                     /codon_start=1
                     /product="basic leucine zipper transcriptional factor
                     ATF-like 3"
                     /protein_id="NP_084336.1"
                     /db_xref="CCDS:CCDS15615.1"
                     /db_xref="GeneID:381319"
                     /db_xref="MGI:MGI:1925491"
                     /translation="MSQGPPAVSVLQRSVDAPGNQPQSPKDDDRKVRRREKNRVAAQR
                     SRKKQTQKADKLHEEHESLEQENSVLRREISKLKEELRHLSEVLKEHEKMCPLLLCPM
                     NFVQLRSDPVASCLPR"
     exon            115..219
                     /gene="Batf3"
                     /gene_synonym="9130211I03Rik; Snft"
                     /inference="alignment:Splign:2.1.0"
     exon            220..712
                     /gene="Batf3"
                     /gene_synonym="9130211I03Rik; Snft"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      712
                     /gene="Batf3"
                     /gene_synonym="9130211I03Rik; Snft"
                     /note="putative"
ORIGIN      
        1 agcagagccc cacgttcagg gcgccccgtg tggcgagcgc gcggcatgtc gcaagggccc
       61 cccgcggtca gcgtgctgca gagaagcgtg gatgcgcccg ggaaccagcc gcagagcccc
      121 aaggacgatg acaggaaagt tcgaaggaga gagaaaaacc gggttgcagc tcagaggagc
      181 cggaagaagc agacccagaa ggctgacaag ctccacgagg agcacgagag cctggagcag
      241 gagaactctg tgctgcgcag ggagatttcg aagctgaagg aggagctgcg tcacctgagc
      301 gaggtgctga aggagcacga gaagatgtgc ccgctgctgc tgtgtcctat gaactttgtg
      361 cagcttcggt cagaccccgt ggccagctgt ctaccacgat gacaccccag ctcactcctc
      421 ctttgtccgg ctcggaacct tggtttgcac actcaggagt ttccctacac acctgtgtcc
      481 aggggtacat gtggctgtgc ccttccaggg agctctgggg ccagcctggg ctcagcatcg
      541 tgctctgggg catctgactt ccggcccctg ccttccggcc ccaggacaga ggatccagag
      601 gccccagcaa gaaggccctt tgagtcgttc ctctctcact ttggcagcta gccggtgctg
      661 tcctttggca ggatcttttc gtctagaact tggaaaataa agatagttac ct
//
