LOCUS       NM_007526               1366 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus BarH-like homeobox 1 (Barx1), mRNA.
ACCESSION   NM_007526
VERSION     NM_007526.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1366)
  AUTHORS   Qiu,C., Martin,B.K., Welsh,I.C., Daza,R.M., Le,T.M., Huang,X.,
            Nichols,E.K., Taylor,M.L., Fulton,O., O'Day,D.R., Gomes,A.R.,
            Ilcisin,S., Srivatsan,S., Deng,X., Disteche,C.M., Noble,W.S.,
            Hamazaki,N., Moens,C.B., Kimelman,D., Cao,J., Schier,A.F.,
            Spielmann,M., Murray,S.A., Trapnell,C. and Shendure,J.
  TITLE     A single-cell time-lapse of mouse prenatal development from
            gastrula to birth
  JOURNAL   Nature 626 (8001), 1084-1093 (2024)
   PUBMED   38355799
REFERENCE   2  (bases 1 to 1366)
  AUTHORS   Racedo,S.E., Liu,Y., Shi,L., Zheng,D. and Morrow,B.E.
  TITLE     Dgcr8 functions in the secondary heart field for outflow tract and
            right ventricle development in mammals
  JOURNAL   Dev Biol 506, 72-84 (2024)
   PUBMED   38110169
REFERENCE   3  (bases 1 to 1366)
  AUTHORS   Qu,F., Li,W., Xu,J., Zhang,R., Ke,J., Ren,X., Meng,X., Qin,L.,
            Zhang,J., Lu,F., Zhou,X., Luo,X., Zhang,Z., Wang,M., Wu,G., Pei,D.,
            Chen,J., Cui,G., Suo,S. and Peng,G.
  TITLE     Three-dimensional molecular architecture of mouse organogenesis
  JOURNAL   Nat Commun 14 (1), 4599 (2023)
   PUBMED   37524711
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1366)
  AUTHORS   Yadav,U.S., Biswas,T., Singh,P.N., Gupta,P., Chakraborty,S.,
            Delgado,I., Zafar,H., Capellini,T.D., Torres,M. and
            Bandyopadhyay,A.
  TITLE     Molecular mechanism of synovial joint site specification and
            induction in developing vertebrate limbs
  JOURNAL   Development 150 (13) (2023)
   PUBMED   37272420
REFERENCE   5  (bases 1 to 1366)
  AUTHORS   Patzek,S., Liu,Z., de la,O. S, Chang,S., Byrnes,L.E., Zhang,X.,
            Ornitz,D.M. and Sneddon,J.B.
  TITLE     Loss of Fgf9 in mice leads to pancreatic hypoplasia and asplenia
  JOURNAL   iScience 26 (4), 106500 (2023)
   PUBMED   37096042
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1366)
  AUTHORS   Thomas,B.L. and Sharpe,P.T.
  TITLE     Patterning of the murine dentition by homeobox genes
  JOURNAL   Eur J Oral Sci 106 Suppl 1, 48-54 (1998)
   PUBMED   9541203
REFERENCE   7  (bases 1 to 1366)
  AUTHORS   Thomas,B.L., Tucker,A.S., Qui,M., Ferguson,C.A., Hardcastle,Z.,
            Rubenstein,J.L. and Sharpe,P.T.
  TITLE     Role of Dlx-1 and Dlx-2 genes in patterning of the murine dentition
  JOURNAL   Development 124 (23), 4811-4818 (1997)
   PUBMED   9428417
REFERENCE   8  (bases 1 to 1366)
  AUTHORS   Mucchielli,M.L., Mitsiadis,T.A., Raffo,S., Brunet,J.F., Proust,J.P.
            and Goridis,C.
  TITLE     Mouse Otlx2/RIEG expression in the odontogenic epithelium precedes
            tooth initiation and requires mesenchyme-derived signals for its
            maintenance
  JOURNAL   Dev Biol 189 (2), 275-284 (1997)
   PUBMED   9299120
REFERENCE   9  (bases 1 to 1366)
  AUTHORS   Jones,F.S., Kioussi,C., Copertino,D.W., Kallunki,P., Holst,B.D. and
            Edelman,G.M.
  TITLE     Barx2, a new homeobox gene of the Bar class, is expressed in neural
            and craniofacial structures during development
  JOURNAL   Proc Natl Acad Sci U S A 94 (6), 2632-2637 (1997)
   PUBMED   9122247
REFERENCE   10 (bases 1 to 1366)
  AUTHORS   Tissier-Seta,J.P., Mucchielli,M.L., Mark,M., Mattei,M.G.,
            Goridis,C. and Brunet,J.F.
  TITLE     Barx1, a new mouse homeodomain transcription factor expressed in
            cranio-facial ectomesenchyme and the stomach
  JOURNAL   Mech Dev 51 (1), 3-15 (1995)
   PUBMED   7669690
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ297677.1 and BF011658.1.
            
            On Aug 25, 2007 this sequence version replaced NM_007526.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ297677.1, Y07960.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-950               AJ297677.1         28-977
            951-1366            BF011658.1         1-416               c
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 24.9 cM"
     gene            1..1366
                     /gene="Barx1"
                     /note="BarH-like homeobox 1"
                     /db_xref="GeneID:12022"
                     /db_xref="MGI:MGI:103124"
     exon            1..304
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..846
                     /gene="Barx1"
                     /codon_start=1
                     /product="homeobox protein BarH-like 1"
                     /protein_id="NP_031552.2"
                     /db_xref="CCDS:CCDS49258.1"
                     /db_xref="GeneID:12022"
                     /db_xref="MGI:MGI:103124"
                     /translation="MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGA
                     APAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALL
                     AAGPGMPGPAGASHLPLELQLRGKLEAAGSGEPGAKAKKGRRSRTVFTELQLMGLEKR
                     FEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPK
                     KNSIPTSEQLTEQERAKETEKPAETPGEPSDRNCED"
     exon            305..596
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     exon            597..681
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     exon            682..1361
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1341..1346
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Barx1"
                     /note="hexamer: AATAAA"
     polyA_site      1361
                     /gene="Barx1"
                     /note="major polyA site"
ORIGIN      
        1 ggcctagagc cccgcgcggg ccccgcgccg gagcttagcc gccgtcgctt cctagccgcg
       61 ggcgcatccc cgggagccgc gatgcagcgg ccaggggagc cgggagccgc gcgcttcggt
      121 ccgcccgagg gctgtgcgga tcaccgaccg catcgctacc gcagcttcat gatcgaagag
      181 atcctcactg agcctccggg gcccaagggc gcagcgcccg cggccgccgc tgccgccgcg
      241 ggcgagctgc tcaagttcgg cgtacaggcg ctgctggccg cccggccctt ccacagccac
      301 ctggcggtgc tgaaggctga gcaggccgca gtgttcaagt tcccactggc gccgctcggc
      361 tgctccgggc tgggctcggc gttgttggcc gccgggcctg ggatgcccgg ccccgcaggc
      421 gcatcgcacc tgccgctgga gctgcaactc cgcgggaagc tggaagcagc tggctctggt
      481 gaacctggcg cgaaagccaa gaaaggacgc cggagtcgca ccgtattcac tgagctgcag
      541 ctgatggggc tggagaaacg cttcgagaag cagaagtacc tctctacccc tgacagaata
      601 gatctagctg agtccctggg cctgagccag ttacaggtga agacgtggta tcaaaatcgg
      661 aggatgaaat ggaagaaaat agtgctgcaa ggtggcggcc tggagtcccc caccaagccc
      721 aagggacggc ccaagaagaa ctccatcccc acgagcgagc agctcacgga gcaagagcgt
      781 gccaaggaga cagagaagcc agcggagacg ccgggcgagc ccagcgaccg aaattgcgag
      841 gactgagcgt cgccgaggat gcggctggcg cggtcggcgg ggacccagga gctggccctt
      901 ccgcgtccat gccgtttgct ttctaatcat ttcattacta ctttgaatgc ggacaattaa
      961 gggccagaca aggaaggaca caggcccgga agccaatccc aggtgtcagc gagcttctgt
     1021 ccccagtctg ggagacttgt gtccagcgtg gccgaagctt ctggtctttc tcggacctcc
     1081 gcagtgtgcg gcgctccacg ctcattcacg ccccgctcct tgcccacact tttatccccg
     1141 gcctccagcc ggccttctgg gcccggacac cggcaggcac acacttactt ccgcgccttg
     1201 gggaccccgc caccgggtgc aggtccctat ggccctgccc tgcagagcag agtcgtctct
     1261 agcagatcag ctgatacctg gcctccccat gtcgctgagg cttctacccc tctcttacaa
     1321 agacggtgac tcttttttcc aataaaatat tttatgacac aaaaaa
//
