LOCUS       NM_207275                526 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus BANF family member 2 (Banf2), transcript variant 1,
            mRNA.
ACCESSION   NM_207275 XM_130486
VERSION     NM_207275.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Huang,C., Gong,H., Mu,B., Lan,X., Yang,C., Tan,J., Liu,W., Zou,Y.,
            Li,L., Feng,B., He,X., Luo,Q. and Chen,Z.
  TITLE     BAF-L Modulates Histone-to-Protamine Transition during
            Spermiogenesis
  JOURNAL   Int J Mol Sci 23 (4), 1985 (2022)
   PUBMED   35216101
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Niu,C.M., Xia,M.M., Zhong,Y.N. and Zheng,Y.
  TITLE     Mus musculus Barrier-To-Autointegration Factor 2 (Banf2) is Not
            Essential for Spermatogenesis or Fertility
  JOURNAL   Cytogenet Genome Res 161 (3-4), 167-177 (2021)
   PUBMED   33951625
  REMARK    GeneRIF: Mus musculus Barrier-To-Autointegration Factor 2 (Banf2)
            is Not Essential for Spermatogenesis or Fertility.
REFERENCE   3  (bases 1 to 526)
  AUTHORS   Lu,Y., Oura,S., Matsumura,T., Oji,A., Sakurai,N., Fujihara,Y.,
            Shimada,K., Miyata,H., Tobita,T., Noda,T., Castaneda,J.M.,
            Kiyozumi,D., Zhang,Q., Larasati,T., Young,S.A.M., Kodani,M.,
            Huddleston,C.A., Robertson,M.J., Coarfa,C., Isotani,A.,
            Aitken,R.J., Okabe,M., Matzuk,M.M., Garcia,T.X. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched
            genes dispensable for male fertility in micedagger
  JOURNAL   Biol Reprod 101 (2), 501-511 (2019)
   PUBMED   31201419
REFERENCE   4  (bases 1 to 526)
  AUTHORS   Tifft,K.E., Segura-Totten,M., Lee,K.K. and Wilson,K.L.
  TITLE     Barrier-to-autointegration factor-like (BAF-L): a proposed
            regulator of BAF
  JOURNAL   Exp Cell Res 312 (4), 478-487 (2006)
   PUBMED   16337940
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL928891.20.
            
            On Aug 17, 2018 this sequence version replaced NM_207275.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076863.1, AV266439.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                AL928891.20        14963-15029
            68-186              AL928891.20        44158-44276
            187-315             AL928891.20        47266-47394
            316-526             AL928891.20        55628-55838
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 70.91 cM"
     gene            1..526
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /note="BANF family member 2"
                     /db_xref="GeneID:403171"
                     /db_xref="MGI:MGI:2684961"
     exon            1..67
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /inference="alignment:Splign:2.1.0"
     exon            68..186
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /inference="alignment:Splign:2.1.0"
     exon            187..315
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..462
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /note="likely ortholog of H. sapiens Chromosome 20 open
                     reading frame 179 (C20orf179); barrier to autointegration
                     factor 2"
                     /codon_start=1
                     /product="barrier-to-autointegration factor-like protein"
                     /protein_id="NP_997158.1"
                     /db_xref="CCDS:CCDS16813.1"
                     /db_xref="GeneID:403171"
                     /db_xref="MGI:MGI:2684961"
                     /translation="MDDMSPRLRAFLSEPIGEKDVAWVDGISRELAINLVTKGFNKAY
                     VLLGQFLLMHKNEAEFQRWIICCCGATECEARQSSTCLKEWCSCFL"
     exon            316..526
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /inference="alignment:Splign:2.1.0"
     regulatory      491..496
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /note="hexamer: GATAAA"
     polyA_site      521
                     /gene="Banf2"
                     /gene_synonym="4930517K23Rik; Baf-L; Baf-like; Gm115"
                     /note="major polyA site"
ORIGIN      
        1 gcattgagct tacccgccgt tacagatccc agtaagaagc ctgctactgc ctgaccaagt
       61 gcaccggggt ctgctgacag acaggaccct tgaaaaccag ctttcagatc cgtcttttct
      121 ccaaggcata ccaatacgaa caggaggata agaaggcaaa cgagagaaga tctgcttcga
      181 agaaagaaga tggacgacat gtcgcccagg ctgagagcct ttctctctga acccattggg
      241 gaaaaggatg tggcctgggt ggatggcatc agccgtgaac ttgccatcaa tttggtcacc
      301 aaaggtttca acaaggccta tgtcctgctg ggacagtttc ttctgatgca caagaatgaa
      361 gcagagttcc agaggtggat catctgctgc tgtggagcta cggagtgtga ggcccgccag
      421 agctccacct gcctgaagga gtggtgctcc tgtttcctat agatatctct ggcctggcag
      481 ctctacctca gataaaggct acccatgcta cctacagaca acctcc
//
