LOCUS       NM_001256181            1065 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus cDNA sequence BC107364 (BC107364), transcript variant
            2, mRNA.
ACCESSION   NM_001256181
VERSION     NM_001256181.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC121792.3.
            
            Transcript Variant: This variant (2) lacks an exon in the 3' coding
            region, which results in a frameshift, compared to variant 1. The
            encoded isoform (2) is shorter and has a distinct C-terminus,
            compared to isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107364.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               AC121792.3         72081-72211
            132-256             AC121792.3         82220-82344
            257-410             AC121792.3         83525-83678
            411-1065            AC121792.3         89945-90599
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 41.84 cM"
     gene            1..1065
                     /gene="BC107364"
                     /gene_synonym="D730018G16"
                     /note="cDNA sequence BC107364"
                     /db_xref="GeneID:329716"
                     /db_xref="MGI:MGI:3618860"
     exon            1..131
                     /gene="BC107364"
                     /gene_synonym="D730018G16"
                     /inference="alignment:Splign:2.1.0"
     exon            132..256
                     /gene="BC107364"
                     /gene_synonym="D730018G16"
                     /inference="alignment:Splign:2.1.0"
     CDS             148..447
                     /gene="BC107364"
                     /gene_synonym="D730018G16"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="uncharacterized protein LOC329716 isoform 2"
                     /protein_id="NP_001243110.1"
                     /db_xref="CCDS:CCDS57244.1"
                     /db_xref="GeneID:329716"
                     /db_xref="MGI:MGI:3618860"
                     /translation="MLRRFVLAAKPRLGGVRLQNRSRGKEKFNPEFELLACLNRKPDN
                     QTDCPNHLKSASLTQTKTGPHRSELQCPKANSRGRQRYKKLWISSATMTRRVLFH"
     exon            257..410
                     /gene="BC107364"
                     /gene_synonym="D730018G16"
                     /inference="alignment:Splign:2.1.0"
     exon            411..1065
                     /gene="BC107364"
                     /gene_synonym="D730018G16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggtctctgc tcgcctcaga ggcttcagcc cggcctgtcg tcccgcagac gtgactggtg
       61 cccgccgcgt cgggagcccc gccgagcgca cgcgcctggg cgtcagctgg agcacccacg
      121 gtgaggttga gggactcatt tcaaaccatg ctgagaaggt ttgtgctggc agctaagccc
      181 aggcttggtg gtgtgagact tcaaaacagg agccgaggaa aggagaaatt caacccagaa
      241 tttgagttac tcgcctgtct aaacagaaaa ccggacaacc agaccgactg ccccaaccac
      301 ctgaaatccg cgtccttgac ccaaacaaag acaggacctc acagaagcga actgcagtgt
      361 cccaaagcga acagcagagg gagacagagg tacaagaagc tctggatcag ttctgccacc
      421 atgacacgtc gggttctgtt tcactgatgg atttttctac ttgttgtgga tcatgactgc
      481 ctgtgccttg gtgtgccggg actctttagt catatgcaga cattgtgaag tttttctcta
      541 ctggttatca cggtcctgac tctcgcctcc atcctgggat ttggcctcag acccctttgg
      601 tgtgtgggca ctatctgaaa gcagtgagcc aagccatggc tggactgcct tattccgtct
      661 cacttccagg gcttccctga ttcccagggt ctggcaacct ggcatctcac gggttttgtc
      721 tgcttcttgt cctgtgtggg gaagggagaa ttcatacagg agattacatc aggtttctgt
      781 tcttcccttg aaaggacaac ataaaatcca tttgtcttca tttaaggacc aggattgatt
      841 tagaaaagaa agccgtaaga caccagctcc aggaacagac cataaaatcc aggagcaagg
      901 tcatcaaacc ccctcccaag aacagcctgg ggataaccac aaaaatggga aaatatctca
      961 gggtgagcca tctgtgctgg gcagccctat cccatctcat ggttaaacat tcatgacata
     1021 ggaatacaga ccactgacca cctgtgacca cctagcaccc accaa
//
