LOCUS       NM_001004192             687 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus cDNA sequence BC048562 (BC048562), mRNA.
ACCESSION   NM_001004192 XM_486259
VERSION     NM_001004192.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC161260.2.
            
            On Aug 27, 2018 this sequence version replaced NM_001004192.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC048562.1, AK029636.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                AC161260.2         33438-33535         c
            99-212              AC161260.2         31480-31593         c
            213-269             AC161260.2         24761-24817         c
            270-687             AC161260.2         23934-24351         c
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 59.35 cM"
     gene            1..687
                     /gene="BC048562"
                     /note="cDNA sequence BC048562"
                     /db_xref="GeneID:434439"
                     /db_xref="MGI:MGI:3618861"
     exon            1..98
                     /gene="BC048562"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..686
                     /gene="BC048562"
                     /codon_start=1
                     /product="uncharacterized protein C3orf84 homolog"
                     /protein_id="NP_001004192.1"
                     /db_xref="CCDS:CCDS23525.1"
                     /db_xref="GeneID:434439"
                     /db_xref="MGI:MGI:3618861"
                     /translation="MQGALIGSWHNSGFYGHYRGQVKSESAGEYRLAAKPPPPAVFLQ
                     RCEEPTKQHYFSKHDNRTSFDKGPYCLLQGIGRRKDLERLWKRHTFLRWAPCELELSQ
                     QPPLESSYQTDFRSGTGLARLPQRLVQFVQVQPSYANTTYQHNFCQPSRGGHCGSAKV
                     RPLEPVTETLPDLPGITKPKLLQHYLHAGVSECLNWSQALKRFS"
     exon            99..212
                     /gene="BC048562"
                     /inference="alignment:Splign:2.1.0"
     exon            213..269
                     /gene="BC048562"
                     /inference="alignment:Splign:2.1.0"
     exon            270..687
                     /gene="BC048562"
                     /inference="alignment:Splign:2.1.0"
     regulatory      668..673
                     /regulatory_class="polyA_signal_sequence"
                     /gene="BC048562"
                     /note="hexamer: ATTAAA"
     polyA_site      686
                     /gene="BC048562"
                     /note="major polyA site"
ORIGIN      
        1 attctctctc tcagatgtag cttcaaaagg acacaaggaa agtttgcctt tttggctccc
       61 tttgtggaaa gatgcaaggt gctttaatag gctcctggca caacagtggt ttctacgggc
      121 actaccgagg tcaagtcaag agtgagagtg ctggagaata ccgtcttgct gccaaacccc
      181 cgcctccagc agtgttccta cagagatgtg aggagcctac aaaacaacac tacttctcca
      241 agcatgacaa ccgcacttcc ttcgacaaag gtccctactg cctgctgcag ggaatcggga
      301 gacggaaaga cctggaacgc ctgtggaaga gacacacctt cctgcgctgg gcaccctgtg
      361 agctggaatt gagccaacag ccgcctctgg aatcgtccta ccagactgac ttccggtcag
      421 gcacaggact cgctaggctc ccccagcgcc ttgtccagtt tgtgcaggtc cagccttcct
      481 atgccaatac cacctaccaa cacaacttct gccagccatc ccggggtggt cattgtggta
      541 gcgccaaggt aaggcccctt gagccagtta ctgaaacact gcctgacctc ccggggatca
      601 caaaacccaa gttgctgcag cactacctcc acgccggagt ttctgagtgt ttaaactggt
      661 cccaagcatt aaaaaggttc agctgac
//
