LOCUS       NM_144885               1302 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus cDNA sequence BC005624 (BC005624), mRNA.
ACCESSION   NM_144885
VERSION     NM_144885.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1302)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844546.8 and AL844532.18.
            
            On Jan 12, 2022 this sequence version replaced NM_144885.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158706.1, BC005624.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               AL844546.8         7357-7494           c
            139-198             AL844546.8         7062-7121           c
            199-250             AL844546.8         5578-5629           c
            251-321             AL844546.8         4474-4544           c
            322-399             AL844546.8         3471-3548           c
            400-597             AL844532.18        206902-207099       c
            598-734             AL844532.18        204912-205048       c
            735-833             AL844532.18        204703-204801       c
            834-1302            AL844532.18        203844-204312       c
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 21.77 cM"
     gene            1..1302
                     /gene="BC005624"
                     /note="cDNA sequence BC005624"
                     /db_xref="GeneID:227707"
                     /db_xref="MGI:MGI:2385132"
     exon            1..138
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            139..198
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            199..250
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            251..321
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            322..399
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            400..597
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            598..734
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            735..833
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     exon            834..1302
                     /gene="BC005624"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1281..1286
                     /regulatory_class="polyA_signal_sequence"
                     /gene="BC005624"
                     /note="hexamer: ATTAAA"
     polyA_site      1302
                     /gene="BC005624"
                     /note="major polyA site"
ORIGIN      
        1 agaggttccc tggactacgc gtctggtaac gcagcgccaa gggtctggtt ccgctatgcg
       61 gattactggg aaaacattcc gccggcgccg ggctgactcg gagtcggagg aggatgaaca
      121 agaatcagag gaggttcggc taaaactgga agaaacccga gaggtgcaga acttgcggaa
      181 gaggccaaat ggggtgagtg cggctgccct gctggtagga gagaaggttc aagaggagac
      241 tactctggtg gatgatcctt tccaaatggc gacagggggc atggtggaca tgaagaaact
      301 gaaggagcgg ggcaaagaca aggtcagtga agaggaggat ctgcacctgg ggacatcgtt
      361 ttctgcagag accaaccgga gggacgaaga tgcagacatg atgaagtaca ttgagacgga
      421 gctgaagaag aggaagggga ttgtggagca agaggaacag aaggccaagc ccaagaatgc
      481 tgaggactgc ctctatgagc tgccagagaa tatccgagtc tcttctgcca agaagactga
      541 ggagatgctg tccaaccaga tgctgagtgg catccctgag gtggacctgg gcatagacgc
      601 taaaataaaa aacatcattt ccacggagga tgccaaggcc cggctgctgg cagagcagca
      661 gaacaagaag aaggatagcg agacatcttt tgtgcccacc aacatggctg tgaactatgt
      721 gcagcacaac cgattttatc acgaggagct caatgcaccc atccgaagaa acaaagaaga
      781 gcccaaagcc cggcccttga gagtgggtga cacagaaaag ccagagcctg aacggtcccc
      841 tcccaaccgc aagcgtcctg ctaatgaaaa ggccacagat gactaccact atgagaagtt
      901 caagaagatg aacaggcgct actgaggcag cggtaggggc tggataacga tgtgatgcac
      961 aggggtgcgt ttgtgtgcat gtgcaagcgt gggggcacac acacatgtcc tcttgcataa
     1021 aacctgctta ttagctcttg agttccccat cagatagtgc ttctgctcag tggctggatt
     1081 tctgttctgg ttttggttgg agactgtagc tctctgtgta tcctaggcca tgaactccct
     1141 cctcctccct actactggga ttttagaccc cccaccccct gcattttcaa gcactaactt
     1201 tgtaactatt ggaagaaaac aatgtgtcta tgtctatcta tattgtttcc tacctagggc
     1261 aaactctcct caagagtgtt attaaatcct ttgtaaatat gt
//
