LOCUS       NM_024473               2551 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cDNA sequence BC005537 (BC005537), mRNA.
ACCESSION   NM_024473
VERSION     NM_024473.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Jensen,P., Magdaleno,S., Lehman,K.M., Rice,D.S., Lavallie,E.R.,
            Collins-Racie,L., McCoy,J.M. and Curran,T.
  TITLE     A neurogenomics approach to gene expression analysis in the
            developing brain
  JOURNAL   Brain Res Mol Brain Res 132 (2), 116-127 (2004)
   PUBMED   15582152
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            AL589699.4.
            
            On Mar 21, 2007 this sequence version replaced NM_024473.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK035718.1, AK078765.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1853              AL589699.4         96298-98150
            1854-2030           AL589699.4         99423-99599
            2031-2153           AL589699.4         100503-100625
            2154-2288           AL589699.4         104527-104661
            2289-2551           AL589699.4         107278-107540
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 10.68 cM"
     gene            1..2551
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /note="cDNA sequence BC005537"
                     /db_xref="GeneID:79555"
                     /db_xref="MGI:MGI:2441726"
     exon            1..1853
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             1725..2414
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /codon_start=1
                     /product="uncharacterized protein C6orf62 homolog"
                     /protein_id="NP_077793.1"
                     /db_xref="CCDS:CCDS26379.1"
                     /db_xref="GeneID:79555"
                     /db_xref="MGI:MGI:2441726"
                     /translation="MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKK
                     KKSALFEVSEVIPVMTNNYEENILKGVRDSSYSLESSLELLQKDVVQLHAPRYQSMRR
                     DVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQAKFEFHHGDYEKQFLHV
                     LSRKDKTGIVVNNPNQSVFLFIDRQHLQTPKNKATIFKLCSICLYLPQEQLTHWAVGT
                     IEDHLRPYMPE"
     exon            1854..2030
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2031..2153
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2154..2288
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2289..2551
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2507..2512
                     /regulatory_class="polyA_signal_sequence"
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      2551
                     /gene="BC005537"
                     /gene_synonym="8030460C05Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcgggcatg gaggggctcc gtcggcccgt cgtgttctct tgacatggct cccgcccgcg
       61 ccacgagcag cgcccccgcc gccgccgccg cctcctcctc cgcagccgcc gctccgcccg
      121 caggctgcgg ctagacggcc caccgacggt cggcctgcga gtcccgctct cctctccgcg
      181 gggaccccgc cctgccgcct agatcccggc ctctctgtcc ccttgggaaa ccacccagcc
      241 gcccccactc gggaaacatg ggctgttgaa cgggaaaagc gaatctagaa cccgggaact
      301 tcattccttg cttttttttg gggtgggagg gtgggcttcc ttttaagaag taattattat
      361 taacacgatt attctcttct tttcccctcc tcccaactga tccttcctac ttaactctct
      421 tcccgcctcc tctacccggg cgggaattgt ttccacattg aaatgagtga gaacccgagt
      481 gatccagtgt ctcccgtggt gcgagtgagt cgctgccgct gaaggccagg ggttgtgggt
      541 gggacctggg ggtcgaaggc aggtgatccc cgggcccggc ctgggacgtg ggagaacccg
      601 ccaccttagc ctcagccatg ctcacacgaa gataatcgaa ctccctacca tcccgaactt
      661 gaacggggtc aaatttatac ggagggctcc ccggggaatg tagaacccac cgcagggcta
      721 agggtgcttg gatcccgggc attaatcagg gctaatcaca gagccggaat aactattaat
      781 accgtttaat agacccccct ttccctctgc catcatggtt ctccttggca gcagcgttcg
      841 cagccgcctg agggtgaaaa cgtgggtgat ggggaagttg gtaatgactc cgctgttttt
      901 tctcatgact cctttgggca acagctgtcc acccccggta tacactgtag ttgattgcag
      961 ggaaaccctg tacctctccc cttctttctc tgctgatttt gcacttttct ctttgctcac
     1021 caccaagtgt aatcaatagc aaagcactga cagttcatag cagtagtgaa atctgaaata
     1081 actaagaatt aatcaggtac tacagccatg gatctggctg ggtaaaatcc aactggggat
     1141 ttcagtttca ttcacctacc ctgttttggt ggttttcagt ttttgggttt tttgttttgg
     1201 ggggggtatt ttttttttcc ctgtatttgg gaagcaacat cacaattttc cctccctttt
     1261 ctcaatttct taatcccttt tctgaaaagg gactatgcga atgggtttca aggattggac
     1321 cggtgtcagc tgtgttttac tgcgcaccta aatcctgatg atcggttttt cattttcccc
     1381 tcaatggctt ttattttggc agtttagcca catgtgtttt ccagaaagtt agttccaagt
     1441 ttttttctcc tctttctttc cttccccttc accttcccca tctaaccccc aaacattatt
     1501 gtccaaacat gactggacag caacttttgt ttcttgaccc tgtggtatga cagtctgcta
     1561 atattgttag aaggtgcagt ttgggggtta cagttgtgat ttagctattc aatcatatta
     1621 gcaggaaaaa aaatgacttg tttctgttgt acttgagtct taagaaaaag tgcccatagt
     1681 ttagtgacaa tttccaaagg ctttagtacc acctgtattt caaaatgggg gacccaaact
     1741 cccggaagaa acaagctctg aacagactac gtgctcagct tagaaagaaa aaagaatctc
     1801 tagctgacca gtttgacttc aagatgtaca ttgcctttgt gttcaaggag aagaagaaaa
     1861 agtcagcact ttttgaagtg tctgaggtta taccagtcat gacaaataat tacgaagaaa
     1921 atattctgaa aggtgtgcga gattccagct attccttgga aagttcgcta gagcttctac
     1981 agaaggatgt ggtgcagctc cacgcccctc ggtaccagtc tatgagaagg gatgtaatcg
     2041 gctgtactca ggagatggat ttcattcttt ggcctcggaa tgatattgag aaaatcgttt
     2101 gtctcctgtt ttctaggtgg aaggaatctg acgaaccttt taggcctgtt caggccaaat
     2161 ttgaatttca tcacggtgac tatgagaaac agtttctgca tgtactgagc cgcaaggaca
     2221 agacaggaat tgttgtcaac aatcctaacc agtcagtgtt tctcttcatt gacagacagc
     2281 atttgcagac tccaaaaaac aaagccacca tcttcaagtt atgcagcatc tgcctctacc
     2341 tgccacagga acagctcacc cactgggcag ttggcaccat agaggatcac ctccgtcctt
     2401 acatgccaga gtaaataaga gcattgacca gcaaaatgga gaagaccaga gaatgcagca
     2461 gctattttct tttcttgttt tcttaccact tttctttcag agtttaaaga aaatggactc
     2521 atgcacagaa cactatgcat tttgaaactt g
//
