LOCUS       NM_030561               2809 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus cDNA sequence BC004004 (BC004004), transcript variant
            1, mRNA.
ACCESSION   NM_030561
VERSION     NM_030561.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Yao,X., Qin,X., Wang,H., Zheng,J., Peng,Z., Wang,J., Weber,H.C.,
            Liu,R., Zhang,W., Zeng,J., Zuo,S., Chen,H., Xiang,Y., Liu,C.,
            Liu,H., Pan,L. and Qu,X.
  TITLE     Lack of bombesin receptor-activated protein homologous protein
            impairs hippocampal synaptic plasticity and promotes chronic
            unpredictable mild stress induced behavioral changes in mice
  JOURNAL   Stress 26 (1), 1-14 (2023)
   PUBMED   36520154
  REMARK    GeneRIF: Lack of bombesin receptor-activated protein homologous
            protein impairs hippocampal synaptic plasticity and promotes
            chronic unpredictable mild stress induced behavioral changes in
            mice.
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Wang,H., Zhang,W., Liu,R., Zheng,J., Yao,X., Chen,H., Wang,J.,
            Weber,H.C., Qin,X., Xiang,Y., Liu,C., Liu,H., Pan,L. and Qu,X.
  TITLE     Lack of bombesin receptor-activated protein attenuates
            bleomycin-induced pulmonary fibrosis in mice
  JOURNAL   Life Sci Alliance 5 (11), e202201368 (2022)
   PUBMED   35820707
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162182.2, CD353313.1, AK030596.1 and BB027102.2.
            
            On Aug 6, 2009 this sequence version replaced NM_030561.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058575.1, SRR7974084.6363.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                AC162182.2         131374-131421       c
            49-430              CD353313.1         1-382
            431-1607            AK030596.1         1-1177
            1608-2295           AC162182.2         97836-98523         c
            2296-2809           BB027102.2         195-708
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 15.17 cM"
     gene            1..2809
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /note="cDNA sequence BC004004"
                     /db_xref="GeneID:80748"
                     /db_xref="MGI:MGI:2136782"
     exon            1..215
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            216..306
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            307..514
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             326..1372
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     bombesin receptor-activated protein C6orf89 homolog"
                     /codon_start=1
                     /product="bombesin receptor-activated protein C6orf89
                     homolog isoform 1"
                     /protein_id="NP_085038.3"
                     /db_xref="CCDS:CCDS28594.1"
                     /db_xref="GeneID:80748"
                     /db_xref="MGI:MGI:2136782"
                     /translation="MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLE
                     KNEPQRGPPQYPLLIAVYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGANSWRSLVH
                     HIRLVSLPITKKYMPENKGVPLQGSQEDKPFPDFDPWSSYNCEQNESEPIPANCTGCA
                     QILPLKVTLPEDTPKNFERLRPLVIKTGQPLSSAEIQSFSCQYPEVTEGFTEGFFTKW
                     WRCFPERWFPFPYPWRRPLNRSQILRELFPVFTQLPFPKDSSLNKCFLIQPEPVVGSK
                     MHKVHDLFTLGSGEAMLQLIPPFQCRTHCQSVAMPIESGDIGYADAAHWKVYIVARGV
                     QPLVICDGTTLSDL"
     exon            515..728
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            729..883
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            884..1023
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1153
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1277
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..2809
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1427..1432
                     /regulatory_class="polyA_signal_sequence"
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1447
                     /gene="BC004004"
                     /gene_synonym="2400006G15Rik"
                     /note="major polyA site"
ORIGIN      
        1 agatttgccc cgcgccccgc gccccgcgac ctcgccagat ctgtttcgga acctggggcg
       61 caaggagctt ttcctttgtg ttccagccct ggccggcggc gcgagaacca cttccgggtc
      121 gcgctgccgg aagcaggaag ttgttggccc accctcctcg cccggcggct gctgtccccg
      181 aggcgggagg agcccgagag ggcgcgggcc cgcatggtta aaccactgtt aagggatcaa
      241 gctcagcctt ctgaacttcc ctccgaggca agctcccttc tgccaggctg gaccctcact
      301 ctggagggac ttcattttgg aaggcatgga tcttgctgct aatgagatca gcatctatga
      361 caaactttca gagactgttg atttggtgag acagacaggc catcagtgtg gaatgtccga
      421 gaaggcaatc gaaaaattta tcagacagct actggaaaag aatgaacctc aaaggggacc
      481 accccagtac cctctcctta tagccgtgta taaggtcctc ctaactctgg gattaatctt
      541 gttcactgcc tactttgtaa ttcagccttt tagctcatta gcacccgagc cagtgctttc
      601 tggagcgaac agctggcgct cactcgttca tcacattcgg ctggtgtcct tgcccattac
      661 caagaagtat atgccagaga ataagggcgt tcctctgcaa gggagccagg aggacaaacc
      721 cttcccagac tttgacccct ggtcatcata taattgtgag cagaacgagt cagagcccat
      781 ccctgccaac tgcactggct gtgcccagat attacccctc aaggtaacgc tgccagaaga
      841 cactccaaag aattttgaga gactccggcc tctggtgatc aagacaggac agcctctgtc
      901 gtctgcagag attcagagct tctcatgcca gtaccctgaa gtcacagagg gcttcactga
      961 gggctttttc accaagtggt ggcgctgctt tcctgagagg tggttcccat ttccttaccc
     1021 atggagaaga cctctaaaca gatcacagat tttacgggaa cttttccctg tttttaccca
     1081 acttccattt ccaaaagact cctccttaaa caaatgtttc ctgatccagc cggaacctgt
     1141 ggtgggtagc aagatgcata aggtgcatga cctgttcacc ctcggcagcg gggaagccat
     1201 gttgcagctc atccctccct tccagtgccg aacacactgt cagtccgtgg ccatgccgat
     1261 agagtctgga gatattggct atgccgatgc tgcccactgg aaggtctaca ttgtagccag
     1321 aggggtccag cctttggtca tctgcgatgg aaccactctc tcggatctgt aggaaacaac
     1381 tgcttggaga cctgaaactc aggctgaaaa agagtgcgga gcggggaata aaaacactga
     1441 aacactttgc atgggttggt tgcttagtta cctgccctgg atgttttggc tgtcagctgt
     1501 atgctggaga cagtggcttg ggcctagcca tcttgtctgt ctgtagcttc ctcaggaaag
     1561 atggaagcct ggctgctggc caagacttct ctcatttctc ctcccccagg ctttggactc
     1621 ccaggtattg gaaataggct gtggctcttt gacttgtgtg gacatggctc ctctactgtc
     1681 ttcttggccg tggagggcag cagtgggtcc tgattctgtt tgtccactct tccttgccgc
     1741 atcacgctgt acttggtgcg aaagccatag ctgactttga tcactacagt ttgacaagga
     1801 aagtgaattt ggaacctggg gggcttgggg ggtggggagg gacagattgg atagctggaa
     1861 ttgcatgttt aaaggtgcct gcacctgtgt cgtgctgcac acctttagtc ccagcacttg
     1921 ggaggcaggt gcatatcttt tgagttctag gctaagctgg tctccatagt gagttcctgg
     1981 tctccaagtg ttacataatg agaccctgtc tcaacactgt tccaccactc cccctgcgcc
     2041 ccccagatct agggatgtag ctcagtggta gagtgcttcc cagacacgtt tgagcccaga
     2101 gtgcagccct cagcatcatg aagaggagga cagtgtacat cttacataat gtccatggcg
     2161 cctggagttt ctgtaagggg tgctggagac tgggttacaa ttcaagtctt actaaatcct
     2221 ggtttcctcc cacactgcca tcagattgtt ttctcagaag ttcggcctcc cccagctggc
     2281 cagcaccctc tctgctaagg cagcagagcc tttgtcaact gctgctgcac cccaccccct
     2341 tcagaaggaa tgagttagaa tagcgggcct gagggagaca gggcacctcc ctgagtttga
     2401 tctttaggcc tgactttcta cagagatgtc agcagcctca gagctgatgt aatgtggtcg
     2461 agggaggagc tgcagagcca gagagccgga gcgtttgctg cagggtctgc ggctcacttc
     2521 agggccctct gccctacctt ttctgtacca gggcaaggtg agatattggt ttagttgaga
     2581 tgcaggagta tcctaaataa tattctgtgc ttactgcacc cccaagtgct ttgggggtgt
     2641 tcttatcaaa cagtgcaaaa aaggatggtc tgccctcttg ttcttttttg gggtcttgct
     2701 gtgtagctct gactagcctc gaactcatgt agaccagact ggcctcaaac tcacagagat
     2761 ctgcctgtgc cccaagtgct gaaaattaaa ggagtatacc attgcaccc
//
