LOCUS       NM_178879               2345 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus UDP-GlcNAc:betaGal
            beta-1,3-N-acetylglucosaminyltransferase 9 (B3gnt9), transcript
            variant 1, mRNA.
ACCESSION   NM_178879
VERSION     NM_178879.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK032108.1, BY231124.1, AK169360.1 and CB590403.1.
            
            On Dec 13, 2012 this sequence version replaced NM_178879.3.
            
            Transcript Variant: This variant (1) lacks an alternate internal
            segment in the 5' UTR, compared to variant 2. Both variants 1 and 2
            encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY721672.1, BY231124.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                AK032108.1         2-31
            31-362              BY231124.1         1-332
            363-2327            AK169360.1         547-2511
            2328-2345           CB590403.1         689-706
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 53.04 cM"
     gene            1..2345
                     /gene="B3gnt9"
                     /gene_synonym="3-Gn-T9; B3gnt9-ps; beta-1; beta3Gn-T9;
                     BGnT-9"
                     /note="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 9"
                     /db_xref="GeneID:97440"
                     /db_xref="MGI:MGI:2142841"
     exon            1..123
                     /gene="B3gnt9"
                     /gene_synonym="3-Gn-T9; B3gnt9-ps; beta-1; beta3Gn-T9;
                     BGnT-9"
                     /inference="alignment:Splign:2.1.0"
     exon            124..2328
                     /gene="B3gnt9"
                     /gene_synonym="3-Gn-T9; B3gnt9-ps; beta-1; beta3Gn-T9;
                     BGnT-9"
                     /inference="alignment:Splign:2.1.0"
     CDS             212..1411
                     /gene="B3gnt9"
                     /gene_synonym="3-Gn-T9; B3gnt9-ps; beta-1; beta3Gn-T9;
                     BGnT-9"
                     /note="beta-1,3-galactosyltransferase-related protein;
                     beta-1,3-N-acetylglucosaminyltransferase 9;
                     beta-1,3-Gn-T9; UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene"
                     /codon_start=1
                     /product="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 9"
                     /protein_id="NP_849210.1"
                     /db_xref="CCDS:CCDS40455.1"
                     /db_xref="GeneID:97440"
                     /db_xref="MGI:MGI:2142841"
                     /translation="MRRRRRPRLCPDAWLTLLLSAALGLLLYAQRDVASPTTRPPARG
                     PQLPRPTPSLRARELPNTARAAPLAYEGDTPVPPTPTDPFDFGGYLRAKDQRRFPLLI
                     NQRRKCRSDGASGGSPDLLIAVKSVAADFERREAVRQTWGAEGRVQGALVRRVFLLGV
                     PKGAGSGGAGTRSHWRTLLEAESRAYADILLWAFEDTFFNLTLKEIHFLSWASAFCPD
                     VHFVFKGDADVFVHVRNLLQFLELRDPAQDLLAGDVIVQARPIRARASKYFIPRAVYG
                     LPVYPAYAGGGGFVLSGATLRRLADACSQVELFPIDDVFLGMCLQRLRLTPEPHPAFR
                     TFGISQPSAAPHLRTFDPCFYRELVVVHGLSAADIWLMWRLLHGPQGPVCAHPQPVAT
                     GPFQWNS"
     regulatory      2308..2313
                     /regulatory_class="polyA_signal_sequence"
                     /gene="B3gnt9"
                     /gene_synonym="3-Gn-T9; B3gnt9-ps; beta-1; beta3Gn-T9;
                     BGnT-9"
                     /note="hexamer: ATTAAA"
     polyA_site      2328
                     /gene="B3gnt9"
                     /gene_synonym="3-Gn-T9; B3gnt9-ps; beta-1; beta3Gn-T9;
                     BGnT-9"
                     /note="major polyA site"
ORIGIN      
        1 acgtggcacg gcctcagccc ccttcctgcc aacgctgcat ttggctcaag ccggggtcat
       61 ggctgccctt gggaccctga actgacagtt tcaggggttg tcacccctcc cccgcggtca
      121 agcgctgctg cggtgggggc aggggcaggg acggaggtcg acagagtgga tgaaggaagg
      181 atagagggcc ctgtgaaggg cggggctgga catgaggagg aggaggaggc cgcgcctttg
      241 cccagacgcg tggcttacgc tgctgctcag cgccgccctc ggactcctgc tctacgcgca
      301 gcgcgacgtg gcatccccca cgaccagacc accagcgcga ggaccccagc tcccgcggcc
      361 cactcctagc ctccgagcac gcgagctccc taacaccgcc cgcgcggccc cgctggccta
      421 cgagggggac actccggtgc cgcccacacc tacggacccc tttgacttcg gcgggtatct
      481 gcgcgccaag gaccaacggc gcttcccgct gctcattaac cagcgtcgca aatgccgcag
      541 cgacggcgca tccggcggtt cgccggacct gctcatcgct gtcaagtctg tggctgcgga
      601 ctttgagcgg cgggaagccg ttcgccagac ttggggagcc gagggtcgcg tgcagggggc
      661 actcgtgcgc cgagtgttct tgttgggcgt gcccaagggg gcgggctctg gcggggcagg
      721 cacccgttcg cactggcgca ccctgctgga ggcggagagc cgagcttatg cagacattct
      781 gctctgggct ttcgaagaca cctttttcaa tctaacgctg aaggagattc actttctatc
      841 ttgggcctca gcattctgtc cagatgtaca ctttgttttt aagggcgatg cagatgtgtt
      901 cgtgcacgtg aggaacctgc tgcagtttct ggagctccgg gatcccgcac aggaccttct
      961 tgcgggtgat gtgattgtgc aggcaaggcc aatccgagct agagccagca agtacttcat
     1021 tccccgggct gtgtatggac tgcccgttta ccctgcctac gcaggtggcg gcggctttgt
     1081 tctttcggga gccacgctcc gccgcctagc tgatgcttgc tcacaagttg agctctttcc
     1141 catagacgat gtctttctag gcatgtgttt gcagcgcttg cggctcacac cagagcctca
     1201 tccagcgttt cgcacctttg gcatctccca gccttcagct gcacctcatc ttcgaacctt
     1261 tgacccctgt ttctaccgag aactggtggt agtacatggg ctgtctgcag ctgacatctg
     1321 gcttatgtgg cgcttgttgc atgggcctca gggcccagtc tgtgcacatc cgcagcctgt
     1381 ggcaacaggt cccttccaat ggaattctta gttatctctc acggtatcaa acttctctta
     1441 ctcagctgca ggacagaaca tgaaagaacc caaaggggtt ttccatgtgg gtttatggtg
     1501 tacatgactt ttctccagat cactcactga gagagctagg gctgggatga aacaaacaca
     1561 agtggatata cccatagcca ggcctcagcc ctcgtggacc tggcaggcat tttcgtatag
     1621 ttactagctt ccttccttct ctcattggat tcccagtggc catatcttat ctgttccctt
     1681 tgaggtctgg tgttagagct aactaagccc ttcaggtcga ggtttgcctg tagcatgtgg
     1741 ggcggggcca tcatgtgtca ccgtcttgcc cactatacac acacacacaa aaccatgcca
     1801 gtgtacttct gaagggtgac ccatccccct cccggaagga gtcctaagat tcctccacta
     1861 taagattgct catattcttc aactccagct tcaaggaaat caacagctca cattttagta
     1921 caaacagccc agtggcagca catggcacgc tgtcactgtg ggcataggtg ctttattgga
     1981 agggggacga ggaagtctcc tctgatcacg aggatgggaa gagtcctggc taccctgaca
     2041 gtgggatgtg cagggtctct ggccagacga aggtccaaat gggaagacac ctgtcaaatc
     2101 agtcatggga gtgccacaca ggcctggctg taggcccagg aaccatacag acagctgggg
     2161 caggtcccct gcacattcat catgaactat acaagatgag gctgtacatg agttaattac
     2221 aaaagtcatt atttacaaaa atctgtacac acatttgaaa aactcacaaa attgtcatct
     2281 atgtatcaca agttgctaga ccaaaatatt aaaaatggga taaaattaaa aaaaaaaaaa
     2341 aaaaa
//
