LOCUS       NM_001382854            1256 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus UDP-GlcNAc:betaGal
            beta-1,3-N-acetylglucosaminyltransferase 4 (B3gnt4), transcript
            variant 1, mRNA.
ACCESSION   NM_001382854 XM_006530311
VERSION     NM_001382854.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1256)
  AUTHORS   Jerome-Majewska,L.A., Achkar,T., Luo,L., Lupu,F. and Lacy,E.
  TITLE     The trafficking protein Tmed2/p24beta(1) is required for
            morphogenesis of the mouse embryo and placenta
  JOURNAL   Dev Biol 341 (1), 154-166 (2010)
   PUBMED   20178780
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157931.11.
            
            On May 27, 2020 this sequence version replaced XM_006530311.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.1010476.1,
                                           SRR11927938.3262075.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                AC157931.11        128907-128944
            39-1256             AC157931.11        130989-132206
FEATURES             Location/Qualifiers
     source          1..1256
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 63.02 cM"
     gene            1..1256
                     /gene="B3gnt4"
                     /gene_synonym="1010001G17Rik; BGnT-4"
                     /note="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 4"
                     /db_xref="GeneID:231727"
                     /db_xref="MGI:MGI:2680208"
     exon            1..38
                     /gene="B3gnt4"
                     /gene_synonym="1010001G17Rik; BGnT-4"
                     /inference="alignment:Splign:2.1.0"
     exon            39..1256
                     /gene="B3gnt4"
                     /gene_synonym="1010001G17Rik; BGnT-4"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..1101
                     /gene="B3gnt4"
                     /gene_synonym="1010001G17Rik; BGnT-4"
                     /EC_number="2.4.1.149"
                     /note="beta3Gn-T4; beta-1,3-Gn-T4"
                     /codon_start=1
                     /product="N-acetyllactosaminide
                     beta-1,3-N-acetylglucosaminyltransferase 4"
                     /protein_id="NP_001369783.1"
                     /db_xref="GeneID:231727"
                     /db_xref="MGI:MGI:2680208"
                     /translation="MLPRLGCVLFCSLVVLLLSCLLLLKERIPAGSSKAHQQFLALPR
                     SHHSQCSPNLTVVNTSLSLPSRHRLFLTYRHCRNFSILLEPSECARDTFLLLVIKSQP
                     AHIEQRSAIRSTWGRAGSWARGRQLKLVFLLGVAGPVPPAQLLVYESWQFDDILQWDF
                     AEDFFNLTLKELHVQRWIAAACTQAHFILKGDDDVFIHVPNVLEFLEGWDPAQDFLVG
                     DVIRLARPNRNTKVKYFIPFSMYRARHYPPYAGGGGYVMSQATVRHLHMAMEEAELFP
                     IDDVFVGMCLRKLGVTPIHHAGFKTFGIQQPLNPRDPCLYKGLLLVHRLSPLEMWTMW
                     ALVTDERLKCAATHKP"
     regulatory      1232..1237
                     /regulatory_class="polyA_signal_sequence"
                     /gene="B3gnt4"
                     /gene_synonym="1010001G17Rik; BGnT-4"
                     /note="hexamer: ATTAAA"
     polyA_site      1256
                     /gene="B3gnt4"
                     /gene_synonym="1010001G17Rik; BGnT-4"
                     /note="major polyA site"
ORIGIN      
        1 ggcttttgtg tcggtgcgcg gtccccaggg gtacttaggg cttcgactat gttgcccagg
       61 ttgggctgtg tgctgttctg cagtcttgtg gtactactgc tcagctgcct gctccttctg
      121 aaggagcgca taccagcagg cagctccaag gcccaccagc agttcttggc actgccaagg
      181 tcccaccata gccagtgctc acccaaccta acagttgtta acacctccct gtccctgccc
      241 agccgtcatc gcctcttctt aacctatcga cactgccgaa acttctccat cttgctggag
      301 ccttcggagt gtgccaggga caccttcctg ctcctggtca tcaagtcaca gcctgctcat
      361 attgaacagc gttcagccat tcgaagcact tggggccggg ctgggagctg ggctaggggt
      421 cggcagctga agctggtgtt cctcctgggg gtggcaggac ctgtgccccc ggcccagctg
      481 ttggtctatg agagctggca gtttgatgac atcttacagt gggactttgc tgaggacttc
      541 tttaacctga ctctcaagga gctgcacgtg cagcgctgga tcgcagctgc ctgcacacag
      601 gcccacttca tactaaaggg agacgatgac gtctttatcc atgttcccaa tgtgctcgag
      661 ttcttggagg gctgggatcc ggcccaggac ttcctagtgg gagatgtcat tcgcttggcc
      721 cggcccaaca ggaacaccaa agttaaatat ttcatcccgt tttccatgta cagggcccgc
      781 cactacccac cttatgcagg aggcggcggc tacgtcatgt cccaggctac tgtgaggcat
      841 cttcacatgg ccatggagga ggcagagctc tttcctattg acgatgtctt tgtggggatg
      901 tgcctgagga agctgggggt gactcccata caccatgctg gcttcaagac atttggaatc
      961 caacagcccc tcaatcccag ggacccttgt ctgtacaaag ggctcctgct ggtgcaccgt
     1021 ctcagccccc tggagatgtg gaccatgtgg gcgctggtga cagatgagag gcttaagtgt
     1081 gcagctaccc acaagcccta gccccgaggg gtgggtggag caacagcttt agagtgactc
     1141 aactcctatc accaggagaa acaattctga aaactggtcc ctggtggtca gcaggaaatg
     1201 atctttattt ttatgctaac aaccttattt aattaaaagt gctgaaacct ggcaaa
//
