LOCUS       NM_028189               2103 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus UDP-GlcNAc:betaGal
            beta-1,3-N-acetylglucosaminyltransferase 3 (B3gnt3), mRNA.
ACCESSION   NM_028189
VERSION     NM_028189.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2103)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY753510.1, AY039028.1 and AC162033.11.
            
            On Mar 26, 2008 this sequence version replaced NM_028189.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC026418.1, SRR1660811.177899.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-638               BY753510.1         1-638
            639-1708            AY039028.1         558-1627
            1709-2103           AC162033.11        147322-147716       c
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.43 cM"
     gene            1..2103
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /note="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 3"
                     /db_xref="GeneID:72297"
                     /db_xref="MGI:MGI:2152535"
     exon            1..83
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            84..666
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..1218
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /EC_number="2.4.1.149"
                     /EC_number="2.4.1.146"
                     /note="core 1 beta-1,3-N-acetylglucosaminyltransferase;
                     BGnT-3; beta3Gn-T3; beta-1,3-Gn-T3; core1-beta3GlcNAcT;
                     beta-1,3-N-acetylglucosaminyltransferase 3; core 1
                     extending beta-1,3-N-acetylglucosaminyltransferase"
                     /codon_start=1
                     /product="N-acetyllactosaminide
                     beta-1,3-N-acetylglucosaminyltransferase 3"
                     /protein_id="NP_082465.3"
                     /db_xref="CCDS:CCDS22405.1"
                     /db_xref="GeneID:72297"
                     /db_xref="MGI:MGI:2152535"
                     /translation="MRLPRQSPYEILLLVLVALLVLLLLLTSKSPPSCSAPERSKEPE
                     DNPGWATGHPRTHPARCRANLSVSSHPDFAGLPLHVRDFLFYRHCRDFPVLREPRVTK
                     CAEPVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQARKYN
                     RLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTD
                     NMVTYLQDHDPDQHLFVGHLIQNVGPIRVPWSKYFIPALVMAEDRYPPYCGGGGFLLS
                     RFTVAALRRAARVLPMFPIDDVFLGMCLQQQGLAPGTHSGVRTAGVFPPSPRVSSFDP
                     CFYRDLLLVHRFLPFEMLLMWDALNQPQLLCGRQSPAY"
     exon            667..2103
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2081..2086
                     /regulatory_class="polyA_signal_sequence"
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2103
                     /gene="B3gnt3"
                     /gene_synonym="2210008L19Rik"
                     /note="major polyA site"
ORIGIN      
        1 tggagggagg agcgggaaag ggagaacagg gaagaagcgg aggaaggcga gtagccaaga
       61 gccagctcaa ggcggtcgcc caggctccgc ccccacgcca tgcggctgcc aaggcagagc
      121 ccctacgaga tcctcctcct ggtcttggtc gccttgctgg tgctgctgct gctcctgacc
      181 agcaagtcac cgcccagctg ctctgcccct gagaggtcca aggagcctga agacaacccc
      241 gggtgggcca cgggccaccc acgcacacac cccgcccggt gccgagctaa tctatccgtg
      301 tcctcgcacc ccgacttcgc ggggctgccc ttacacgtgc gcgacttctt gttctaccgc
      361 cactgccgcg acttcccagt gctccgagag ccgcgggtta ccaagtgcgc ggagcccgtg
      421 ttcctgctgc tcgccatcaa gtcctcgcct gcaaactatg ggcgccgcca gatgctgcgc
      481 acgacgtggg cgcgcgagag acgggtgcgt ggggcgccac tgcgccgcct cttccttgtg
      541 ggctcagacc gcgacccaca acaagcacgc aaatacaacc gactgctgga gctggaagcg
      601 cagaaatacg gcgacattct ccagtgggat ttccatgact ccttctttaa cctgacgctt
      661 aagcaggtcc ttttcctgga gtggcagcta acctactgta ccaacgccag cttcgtgctc
      721 aatggggacg acgatgtgtt cgcacacacg gacaacatgg tcacctacct gcaggaccac
      781 gacccggacc aacacctctt cgtggggcac ctgatccaga acgtgggtcc catccgggtg
      841 ccctggagca agtacttcat ccccgctctg gtgatggcgg aggacagata cccgccctac
      901 tgtggtggcg gcggcttcct gctgtcgcgt tttaccgtgg ccgccctacg tcgcgccgcg
      961 cgcgtcctcc ccatgttccc aatcgacgac gtgttcctgg gcatgtgtct gcagcagcag
     1021 ggtctggctc ccgggacgca cagcggagtg cgcactgcgg gggttttccc ccctagccca
     1081 cgtgtgtcat ccttcgaccc ctgcttctac cgcgacctgc tcctcgtgca ccgcttcctg
     1141 cccttcgaga tgctgctgat gtgggatgcg ctgaaccagc cccagctcct ctgcggcagg
     1201 cagagccccg cctactgaga ggtttggggg agttgacatc ccctagctca tgtcctgcct
     1261 catccacgtg caaagggctg gcttcaagga gaagttcaaa gtgaggggca gaaaggtggg
     1321 tctgaggagt tcatagggca aactcctaag tacgcttgga aaccctcttg gtactgttca
     1381 cagcaggaac tctgagtcta gccaactctg agtggctcta agtggccgct aagcaaaaac
     1441 tgctgtggac agagcccatg ggttttaggc tctgggcctt ggcctctctc aggcccccaa
     1501 ggaattgggc agaggaacaa ggtggatttt aaactgaggt gctcagagat cttgacttga
     1561 cccccactag tgtctcccaa gaacttggag aaccacaggg gcaggagggg tcctgtgtcc
     1621 cacagaccgg gctggcagga aataaagtcc atagaaggtt gaacgtgatt gtagggggaa
     1681 ggttaagata aaactcaggg ctctgccacg ttttaatttt atctatttag gaagggagcc
     1741 aggtcctgtc ttcctctctg tttgggtcct gggacttgaa ctcaaatctt caggcttggc
     1801 agcaagtgcc tccattaact gagtcatctc gccagtgcct ttttagtttt cagcactact
     1861 catgttttaa caccggctgc tctaccccac ctctctttga ccttcaatat taactcattg
     1921 caacatgttc acatctacag catggctgta tgtggctcct gcctcccctt gctcccttcc
     1981 ctgtagctac tttgtgggtt ctttttcttc caaaattgca acccctcccc aacaccagac
     2041 aggagagaaa aaagtataga ggaaagaaaa gagattaccc aataaagtct cagcgcttgg
     2101 aaa
//
