LOCUS       NM_033149               4914 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase,
            polypeptide 5 (B3galt5), transcript variant 1, mRNA.
ACCESSION   NM_033149
VERSION     NM_033149.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4914)
  AUTHORS   Taniguchi,M., Okumura,R., Matsuzaki,T., Nakatani,A., Sakaki,K.,
            Okamoto,S., Ishibashi,A., Tani,H., Horikiri,M., Kobayashi,N.,
            Yoshikawa,H.Y., Motooka,D., Okuzaki,D., Nakamura,S., Kida,T.,
            Kameyama,A. and Takeda,K.
  TITLE     Sialylation shapes mucus architecture inhibiting bacterial invasion
            in the colon
  JOURNAL   Mucosal Immunol 16 (5), 624-641 (2023)
   PUBMED   37385587
REFERENCE   2  (bases 1 to 4914)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   3  (bases 1 to 4914)
  AUTHORS   Dunn,C.A., van de Lagemaat,L.N., Baillie,G.J. and Mager,D.L.
  TITLE     Endogenous retrovirus long terminal repeats as ready-to-use mobile
            promoters: the case of primate beta3GAL-T5
  JOURNAL   Gene 364, 2-12 (2005)
   PUBMED   16112824
  REMARK    GeneRIF: case study of the endogenous retrovirus long terminal
            repeat promoter of this enzyme, beta1,3-galactosyltransferase 5
REFERENCE   4  (bases 1 to 4914)
  AUTHORS   Zhu,D., Shen,A., Wang,Y., Gu,X. and Gu,J.
  TITLE     Developmental regulation of beta-1,3-galactosyltransferase-1 gene
            expression in mouse brain
  JOURNAL   FEBS Lett 538 (1-3), 163-167 (2003)
   PUBMED   12633872
REFERENCE   5  (bases 1 to 4914)
  AUTHORS   Gitton,Y., Dahmane,N., Baik,S., Ruiz i Altaba,A., Neidhardt,L.,
            Scholze,M., Herrmann,B.G., Kahlem,P., Benkahla,A., Schrinner,S.,
            Yildirimman,R., Herwig,R., Lehrach,H. and Yaspo,M.L.
  CONSRTM   HSA21 expression map initiative
  TITLE     A gene expression map of human chromosome 21 orthologues in the
            mouse
  JOURNAL   Nature 420 (6915), 586-590 (2002)
   PUBMED   12466855
REFERENCE   6  (bases 1 to 4914)
  AUTHORS   Reymond,A., Marigo,V., Yaylaoglu,M.B., Leoni,A., Ucla,C.,
            Scamuffa,N., Caccioppoli,C., Dermitzakis,E.T., Lyle,R., Banfi,S.,
            Eichele,G., Antonarakis,S.E. and Ballabio,A.
  TITLE     Human chromosome 21 gene expression atlas in the mouse
  JOURNAL   Nature 420 (6915), 582-586 (2002)
   PUBMED   12466854
REFERENCE   7  (bases 1 to 4914)
  AUTHORS   Pletcher,M.T., Wiltshire,T., Cabin,D.E., Villanueva,M. and
            Reeves,R.H.
  TITLE     Use of comparative physical and sequence mapping to annotate mouse
            chromosome 16 and human chromosome 21
  JOURNAL   Genomics 74 (1), 45-54 (2001)
   PUBMED   11374901
REFERENCE   8  (bases 1 to 4914)
  AUTHORS   Zhou,D., Henion,T.R., Jungalwala,F.B., Berger,E.G. and Hennet,T.
  TITLE     The beta 1,3-galactosyltransferase beta 3GalT-V is a stage-specific
            embryonic antigen-3 (SSEA-3) synthase
  JOURNAL   J Biol Chem 275 (30), 22631-22634 (2000)
   PUBMED   10837462
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DN172993.1, BC047347.1, BY124193.1, AC154258.2 and AK004442.1.
            
            On Apr 4, 2008 this sequence version replaced NM_033149.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC057887.1, BG965086.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                DN172993.1         238-284
            48-122              BC047347.1         415-489
            123-185             BY124193.1         99-161
            186-619             BC047347.1         553-986
            620-3564            AC154258.2         13902-16846
            3565-4914           AK004442.1         55-1404
FEATURES             Location/Qualifiers
     source          1..4914
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 56.88 cM"
     gene            1..4914
                     /gene="B3galt5"
                     /gene_synonym="1190002B21Rik; b3Galt-V"
                     /note="UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase,
                     polypeptide 5"
                     /db_xref="GeneID:93961"
                     /db_xref="MGI:MGI:2136878"
     exon            1..47
                     /gene="B3galt5"
                     /gene_synonym="1190002B21Rik; b3Galt-V"
                     /inference="alignment:Splign:2.1.0"
     exon            48..224
                     /gene="B3galt5"
                     /gene_synonym="1190002B21Rik; b3Galt-V"
                     /inference="alignment:Splign:2.1.0"
     exon            225..4914
                     /gene="B3galt5"
                     /gene_synonym="1190002B21Rik; b3Galt-V"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcctgcgtc ccctgccctg tcccttctca gctccagcag gacgacgtta tttccgagag
       61 acacaatcat catttttcgg tagataaacc aagtccaaaa ggttatctca gaaggtaatg
      121 tgagacctca ctcaccggct gctctttaaa aggaattcat ttcctcttgg cttctattct
      181 gtggcttcat cctctggacg aacgtgagct cttactcggc aaagatggct cacatgaaga
      241 caaggctagt ttacgcctcc attctcatga tgggcgcact ctgcttgtac ttcagcatgg
      301 attctttcag agaactcccg tttgttttta agaaaagtca cgggaagttc cttcagattc
      361 cggatataga ctgcaagcag aagccgcctt tcctggtgct gctggtgacg tcatctcaca
      421 agcagctggc cgctcgcatg gccatccgca agacgtgggg tagagagaca tctgtgcagg
      481 gccaacaggt gaggaccttc ttccttctgg ggacctccga cagcaccgag gagatggacg
      541 ccacaaccct ggagagcgag cagcaccgcg acattatcca gaaggacttc aaggatgcct
      601 acttcaacct gaccctgaaa accatgatgg gtatggaatg ggtctaccac ttttgtcctc
      661 agacagctta cgtgatgaaa acggactctg acatgtttgt gaatgttggc tatctgacgg
      721 aactgctgct aaagaaaaac aaaacgacca ggttcttcac aggctacata aagccccacg
      781 actttcccat ccggcagaag ttcaacaagt ggtttgtgag taagttcgaa tatccctggg
      841 acaggtaccc acctttttgc tctggtactg gttatgtctt ttccagcgac gtggcgatcc
      901 aagtatacaa cgtctcagag agcgttccgt tcatcaagct ggaggatgtg tttgttgggc
      961 tctgcttggc caagctaaag atccggccgg aggagctgca caccaaacag accttcttcc
     1021 ctggcggttt acgcttttcc gtgtgccgct ttcagaaaat tgtggcatgc cattttatga
     1081 agccccagga cctgctcact tactggcaag cactggagaa ctcgaaagaa caggactgcc
     1141 ctgctgtctg aggggaccct gggggcgcct aggacaaact tctgataacc tttggtgatg
     1201 atttgggacg atctgggatg gtcttgctgg gaactgtctc gggtagagag ccgatgagga
     1261 tgttctcaga gccacacggg aaagggtata tacgaaagct gaggaatgac ttcttcccac
     1321 ttggcacccg gagcaataac agatctcgtt tttttcaggc ctttgcggga tgccctcaat
     1381 gcttgagaca tgcccttcat ccacctgttt cagggctcag catacattag aagccctggg
     1441 taggttaaga gccagcagcc agggtcactt actcgttcaa agactcacag cctgtagacg
     1501 aatcgggaat gagaatcaag tggtatcagg attcaattgg tggtcgatcc ccaactgggt
     1561 atcccatgcc ttgggagaag gtggtggtgg gagaaattgt gtgtgggggg attcttataa
     1621 ctaagtagca tccttcagtc cttttctggg gtctcctgcc cctcacttgt actttttgaa
     1681 tgttaaggct aggatgaacc ggcttctcag gccttgcctc ttgctcaaat gatatagccg
     1741 ggcactgagt taatacagat taaccacttg atacccaaag tgtcctcagt atgattttag
     1801 gagacatgca tgcctgcagc ctctgtagct cacttccatg ctagaaggaa cccggtttat
     1861 aggaccataa aagtcaggct gacaagccgc tgctgagtct tgctgtgtag actgactact
     1921 gctaacatcc cgatgaggga gatgtctcca ctgagccagc actacattgg atgcactatt
     1981 agtgactatt tgcagccctg ggggcacttc agacctctaa gttcaaactc aagggtagcc
     2041 aggtacaggc atggtctgta tggatacccg ggagctttcc tgggccctgg gctgggtctg
     2101 agctcctgag atacagagcc aggaagtagg cccagtctag gggctcttcc tgaatctgtg
     2161 gtccttaccg acctcccaga atttatcatg tagtcgtaga catgctgagt gttgcctttt
     2221 ggaatttaac tttctattct cagcttagtg tccctacccc tgaaggtttt cagagctggg
     2281 taaagacagg ggacttatgg ccattcatca gacaggtaat cttgctgtgt gtcacaggaa
     2341 ttattgcttt cccacagctt tttactcttc tagattttac tatgtgcttg gggcaaagac
     2401 tgtgtaatta taaatgttgg aatatgctct cacctgaact caggaaaact taacggtcgg
     2461 aacaccgtta ggttggagga agctggaagc tgcctccggg gcctcatttt cacacttgtt
     2521 cctgtctctc ctatgaatct cttccacgac tcttggggaa atttcttctg tctgtgacat
     2581 ccttcaaaat catgcagcac caagttctgg accctcattg agaatatgtg aaattctgaa
     2641 ccaggtaaag agaaagggta tttgttcctg ggtgtgtact atggactaca tacaccatcc
     2701 aaacccaacc caaccctaca tcttctttga cagaggggga agccaaagct tgtaatcacg
     2761 tggtggtgtt gctatctaga gggtgggaga gctggcatcg gcacctagca ccagccacca
     2821 tgtgctagac cttccgttta ctcattcatt agccatattg ctctttgcat ccgcacatca
     2881 tgaacaaggt caaggttagg tctgcagaga gcagactgga tcgagcattc agtgctgaga
     2941 agatggttgg gcgtaggtat atgcacaggg cactggagcc taagcagatg tggtcacact
     3001 tactgttgca tttaagatgc cagcacccct ggcaaggggc catccttcat tcttacaacc
     3061 agattggttg tccgcagagg cagctgaagt gactcagtga ctcatccagc gtcggagacg
     3121 tggcacagac acaatgctct gtcttctcct ttggtgcact gtccacatcc ctttccatgg
     3181 gcttgcttct ctcagaagct tggggctggt gctaccccag gagtcaccag catctcactc
     3241 tgcctgcacg ctgccacttc tgacctggct gttgtcttga gtgttggtct acttcctggt
     3301 tctgcttgac ttcctgtgac ttggccctgg ggttatccgt ggaattctca caaacctccc
     3361 atttagacta gccttctcac gaggtcatgt gtggccaagt ctggcatatt gagttcagtc
     3421 cttgagatct gtgtggttga aggagagaat taatctttac aagcccgcag tggcacatat
     3481 gtgcctgcac acatgtgcat gcaaaactgt aataagtaac atgtaaatga gacaattttt
     3541 gcaaagactc cttcaaacag tgacctctga aggtctttgc ttatttttat ttctgtgttg
     3601 ctctccatga tgcaaatcct tgtgtgtgaa cactggcaca ggtgtagtag aaaaaaaaaa
     3661 ccctctcagt taggattatt tgcaaaatgc cttagtttgg ttgggaattc aatagaaaat
     3721 tttgtcaggg tcttgcccca ggtctgtcta gttccctact tgttaattta actcccagga
     3781 taagaccctc agagccggcc ttagactgat cctggaggtg aagggtgaaa ccatccaagc
     3841 tcagagttga gaagggctgt gtaagcctga caggagcaag tcagagtgaa gcaaagtaac
     3901 aatagcaaaa ggttttaagt ccattaaaag tagcattttc taattaccag gcataacact
     3961 tttaaataca agtagaaaat ggattttgtg gccaaatgtc atatacctgc tttttttgtg
     4021 atattgtttt gtggtttttg gtgctgggga tggagcccta atgcttatca gggctcccct
     4081 actgtgcctc tccagccccc tgttgagttg tttttcacca tgtggtttac tacctcctgc
     4141 aggggtcttg gggatcagag cctggtgcct ccagttcaga tgctgtgctg ggtatttcta
     4201 actgttaact ctggaagaga gttttaatga gaaattattt cttcattatt aattgacgta
     4261 gaaagattca gttcattgtg ggcgacacta ttccctaggc agggtatact aaacagtacg
     4321 agaggagaaa gccagccgag ggcaagcaag gatccgtgtt tacctctctg tttgtgagac
     4381 tgtggtgtgc tcatctgctt catgttcctg ccttgacttc cctgcaataa cacactgcaa
     4441 cctggacttg tgagccaaat aaaccctctc ttccccaagt tgattttgtc acagtaacag
     4501 aagggaagct aaaccagatg ctcaggttga tacctgcggg ctcagaccac caggcccttc
     4561 tcaccctgcc ctggatgtca tccagtgcca tctctctgtc ccacacagag gggagcccag
     4621 acgctgctta cattctgctt cagggaaata tcagaggagg agagctgact catttcacat
     4681 aaacaaacaa acaaaaacat gcctcctatg actgcaaaca actcatctgc agctgcggac
     4741 actttgtggt caaatttgat ttccaaaagg attaaaaaat taagtgtcac tgaatggagt
     4801 ttggaattgt catttgcctg tatgaggctc tgatactgta cttggggagc gggtatatgt
     4861 atttatgatt tattaatgat atttatcttt aataaaaatt aagttataag cagc
//
