LOCUS       NM_001033474            3607 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus ataxin 7-like 3B (Atxn7l3b), mRNA.
ACCESSION   NM_001033474
VERSION     NM_001033474.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3607)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3607)
  AUTHORS   Bulfone,A., Carotenuto,P., Faedo,A., Aglio,V., Garzia,L.,
            Bello,A.M., Basile,A., Andre,A., Cocchia,M., Guardiola,O.,
            Ballabio,A., Rubenstein,J.L. and Zollo,M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   3  (bases 1 to 3607)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   4  (bases 1 to 3607)
  AUTHORS   Aubert,J., Dunstan,H., Chambers,I. and Smith,A.
  TITLE     Functional gene screening in embryonic stem cells implicates Wnt
            antagonism in neural differentiation
  JOURNAL   Nat Biotechnol 20 (12), 1240-1245 (2002)
   PUBMED   12447396
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY101566.1, BC058561.1, W48093.1, AK003616.1 and AI662093.1.
            
            On Sep 2, 2006 this sequence version replaced NM_001033474.1.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               BY101566.1         2-198
            198-2322            BC058561.1         130-2254
            2323-2651           W48093.1           119-447
            2652-3589           AK003616.1         1084-2021
            3590-3607           AI662093.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..3607
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 60.92 cM"
     gene            1..3607
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
                     /note="ataxin 7-like 3B"
                     /db_xref="GeneID:382423"
                     /db_xref="MGI:MGI:1914971"
     exon            1..3599
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             305..598
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
                     /note="putative ataxin-7-like protein 3-like protein;
                     putative ataxin-7-like protein 3B"
                     /codon_start=1
                     /product="ataxin-7-like protein 3B"
                     /protein_id="NP_001028646.2"
                     /db_xref="CCDS:CCDS36060.1"
                     /db_xref="GeneID:382423"
                     /db_xref="MGI:MGI:1914971"
                     /translation="MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCG
                     YFYLEFADTGSVKDFGIQPVEDKGACRLPLCSLPGDPGDGPQTELQRSPPEFQ"
     regulatory      3549..3554
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
                     /note="hexamer: AATAAA"
     regulatory      3580..3585
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3593
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
     polyA_site      3597
                     /gene="Atxn7l3b"
                     /gene_synonym="4921506J03Rik; 6230409E21Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggaagtgggg gggcgggccc agactgtcag cgagaggaag aggcccgaac ggctgggtga
       61 ggcgccgaga cggttttcgc ggcgagccgg gctcgggtgc agctcagaat cccgaacttg
      121 ggtgatcgtc gcagccgagc gagcgttggg gctccggagc ggcggttgct gtcgccgcgg
      181 acgccgccgt cgtcgccgtt gccgtcccgg aggacgaggc ccggagaggc cttgcaggcc
      241 tagcggagcc cgagtgtgcc gtgagtaaag ccagcgccct ccgcacggtc gcttgccggt
      301 taagatggag gagatttcgt tggccaacct ggatactaac aagctggagg ccatcgccca
      361 ggagatctat gtagacctga tagaggattc ctgcctgggc ttctgctttg aggtgcaccg
      421 ggcggtcaag tgtggctact tctacctgga gtttgcagac actgggagcg tgaaggattt
      481 cggcatccag ccagtggagg acaaaggcgc gtgccgcctc ccgctctgct cccttcctgg
      541 ggatcccggg gacgggcccc agacggagct gcagcgttca cctccggaat tccagtagtc
      601 accacctgag agagggcgac acagtgacca ggacaataat agagactggt ccccgtggct
      661 ttggaggaat aagctaagtt ggagagaaaa aaaattaaat caacaaataa aggaaaagca
      721 aacaaaagtc ccatttaccc cccttcaaga tcttagcatt aaaatacaaa aaaaaaaaaa
      781 accgagaagg cgtaaaacga acaaaacacc caaagaggag aatttaggaa tcccggtcca
      841 tttgaaaggg tctcccatgc cagctctgaa atcctgggca gaagaaggtc cagaggcgtc
      901 gtgctgtatt ttgagctgta taaaatacat gtggatgtgc aaggaccctg aactgtcctc
      961 ggtacacagg tgagcagctg tgtacccagc ctatacaatt ctatttgttt ctcagattct
     1021 gcatctgcct gatgtcatgg gcctccttcg aagttttaga tggtgttgat ggtcaggccc
     1081 tgatcagtca gcttcggtgg actgctcctc tgatttctaa gcctccaatt gggcctcttt
     1141 gatacaaata gaagtcaggt atgtgactta aatactaaaa atattaatat tcccgtttga
     1201 attcgatggg aagcccttgt gcccttgtct tcaagaagtt ccaaatcacc tgttttccaa
     1261 aggtccagca ttttgtgggg acaaggcctt gcctttggct catcagaaga cctgtctttc
     1321 catcctactg agtggcaaag gtttggcaaa ggacaaggtg gttttcaaac agctgaagat
     1381 tttcttttga tgctatgagg atgaagtgta cctccgcgac tgcacatcat gtccaactgg
     1441 aagactcatg tcttgaatta catactgcgg acataagttt ggtgggacgg ttttttccta
     1501 cttttgagtt actggtgatg taaccagccc atgggtctga cttgatcatt atgacaggtc
     1561 gctgccctcc agtggtacca ctgacctaca gaaggacatc atggcagagc aggaggctgt
     1621 ttaaaaattg agccaggagg gaactttttt ccatctgcct tcaataatgt gaatgagttt
     1681 aatgctaaga gccctgaaac aggcctggtt tacctggtat ggttgcagaa ttccttcatc
     1741 aactgggcag tcagacctct gctgtgctga ttgagactgt ctccaccttc tctgccctca
     1801 caaacagcag ttcatcactt ggtcctcaga acctccttcc agcaggggct gtatatttct
     1861 tgatggaaag ttggaggcag ggttagaagt aaaggggaag tgagtggcat atcaaaactg
     1921 gtctgtttca gtccctaaaa tggggggtta tggagggtgg gagtcctgag gtgagcagaa
     1981 aagaaaggtg ctgctttatt tgaaatgttt tcttacctca ttctgtgccc cagtaaaggg
     2041 tccagcctca tctgtctggc ttggccatgt tcctgtcact gctccactgc ctctctggtg
     2101 cagctcatga ttccaggtgc tgcttgccac actaggtttt ctctcgacca atttcagctc
     2161 atcttccagt gctgctcctc cgaagcctac acaagtttcc tttttccttt tgttgtcgtt
     2221 ttcgttttct aactttaaat ttttatgttg ttttgtttta cctgttttta tggaagcctt
     2281 agaggagaat ctctcatggc tccctctgtt tggattggaa tgggaaaata acaaaaaaaa
     2341 aaaaaaaaaa aaaaaacaac ctttttttaa atttacaagg cagtgtcatg tctaagtgtt
     2401 tctcttatat aaggctgcct tgctagtata tctccctgcc tgtcatgagt tctttcttcc
     2461 cattgctact tggatacggc ctcttaggac ttactgcaga gccaggaatg ctggcataca
     2521 caaggaagga gttggttctg ctccacattt ctaatcctat tgtgtatgta tcttccttct
     2581 cccaggagct atttgaagtg tgtggactaa tttggattat actcaaagag ttgaggcaat
     2641 tatagtgctt gagccttgag actgtctgtt gttgccttct cagagttttg cagctcaggg
     2701 ttggggccta gttacagttt ggatccttag tccaagaatt ttgagaacgt gagtaaaacc
     2761 ttggcaggag ctaaaaaata cttaaaagat accttgctac atgagttctt taaaaacctt
     2821 cagtgaattg tggaaaaaca aaaaagcagt gtgagattcc tgcttatata aagtacttgg
     2881 gaaacatgaa agggagaaag gccatggccc actcactctt gccttcagat agggagctca
     2941 aatgtgactt tagttttctt gccttttctg gttagaacat aaagatgtgg gtagtagttt
     3001 ggggtaatgg gtttgctcat attacttccc ttcttgttac tgcttttgtt ttctgtctcc
     3061 aacattttca ttagggctgt agctccccac tctgtgtaga taaaaggtgg gttcagtcca
     3121 gctattattg ccctgaggga acaaactact tttttgggag caaatgttct ccagcatata
     3181 gttgacagtg gttaggagcc ctccccttcc cctgccctcc tgtaacagca gaatcctatc
     3241 cttcctcttc tgttcattgt attgaccaac cagtaatcct attatgtatc tgagtgtgtg
     3301 tataggggga aggggttctt tacattttct gtggtttgtg cttttttctt cagtaaatta
     3361 gttcccacca tcgcatgccc aggggccact acctggcatt atcgcatgct gggatcattg
     3421 ggggagggta gtttgaaatt caccactgtc ctttgttttg gagattctta ttttttaata
     3481 agtaatccgt cctatacaaa tagctaatta actcttgtgt tccccctgcc catatggctg
     3541 ctggtgtaaa taaattgcat tttcccattg ctaaatgata ataaaattta aaagaaataa
     3601 aaaaaaa
//
