LOCUS       NM_001374022            3876 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ataxin 7-like 1 (Atxn7l1), transcript variant 3, mRNA.
ACCESSION   NM_001374022 XM_006515123
VERSION     NM_001374022.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3876)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132354.2, AC132312.4 and AC160112.2.
            
            On Sep 6, 2019 this sequence version replaced XM_006515123.4.
            
            Transcript Variant: This variant (3) encodes the longest isoform
            (3).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.953168.1,
                                           SRR13422597.1326891.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-945               AC132354.2         30012-30956         c
            946-1014            AC132354.2         29426-29494         c
            1015-1119           AC132312.4         63381-63485         c
            1120-1342           AC160112.2         108072-108294
            1343-1617           AC160112.2         124082-124356
            1618-1700           AC160112.2         127051-127133
            1701-1951           AC160112.2         127999-128249
            1952-2144           AC160112.2         140817-141009
            2145-2266           AC160112.2         145134-145255
            2267-2572           AC160112.2         146546-146851
            2573-3876           AC160112.2         149133-150436
FEATURES             Location/Qualifiers
     source          1..3876
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 14.03 cM"
     gene            1..3876
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /note="ataxin 7-like 1"
                     /db_xref="GeneID:380753"
                     /db_xref="MGI:MGI:3584458"
     exon            1..945
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1014
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1119
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1342
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1617
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            1618..1700
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            1701..1951
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2144
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            2145..2266
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            2267..2572
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     exon            2573..3876
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3856..3861
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /note="hexamer: ATTAAA"
     polyA_site      3876
                     /gene="Atxn7l1"
                     /gene_synonym="2810423G08Rik; Atxn7l4"
                     /note="major polyA site"
ORIGIN      
        1 agtctctggt gtgcgcggag caaagtctcc gcagtggctc taccagctgg gacacacaac
       61 catcgcacag atccccggga acgccagaga caaaatgatt ttggaatttt gcctgctatg
      121 aaaccaagga tgggatgatc actccccttg cccccactca ccggtttctc ggagttatgt
      181 ccatttcccc tttgcttctg actcctgaag gcatctgcga agagaccgga ttccaaggct
      241 caccgagaga ggagacaggg tgaagtggat ggtagctggg aggtgtactc tctagagtcc
      301 ctgctctacc ctgagggata aggatggagg ggtgcaaaac agccgatttc gttcccacta
      361 agcctccggg atccttctgg gacgtcgcat ggtgggtgac tgggactctg ggaggaagag
      421 acttgcagcg agcaaaactt tcggtcctcc agcggcgact ggacgaaaga acctgtgctt
      481 cttcccgggg tcgcgccagg gttgctggct ggacagggcg gcggggcgca gcatcctggc
      541 gcgaggcgac cctgcccggc tgaaccggcg gcgcactcag gctctgctct cagcctgccg
      601 gactccgcgc tctcccgagc cccgcgcaca cggcgcctct ctggcgcccc cagcggctgc
      661 acgcagcaca gcagggccgg gcagggccga gcgcgccccg cctcccgcct cctccgccgc
      721 cctcctcccc ctctcagaac actcaatgtc ggaacgttcc gaagatgacg tcggagcgtt
      781 ctcgaatccc gtgtctctcg gctgctgctg ccgaaggaac agggaaaaag caacaagaag
      841 gaacagcaat ggcgacactg caccgcaaag tgcccagtcc ggaggcgttt ctgggcaaac
      901 cctggtcctc ctggatcgac gccgccaaat tacactgctc cgacaatgta gatttagaag
      961 aggctggaaa agagggtggc aaaagcaggg aggttatgag gcttaataaa gaagatatgc
     1021 acctatttgg ccattatcca gcacatgatg acttctatct ggtcgtgtgc agtgcctgca
     1081 atcaggtcgt caagccccag gtcttccagt cacactgcga gagaagacac agttcaatgt
     1141 gcaggccttc tccctctcca gcgtctccag cctccaattc ccggacatcg ctagcacagg
     1201 caaagacgaa agcctgtctc agcggccata gcgctgtcag cagcacctca aagccattta
     1261 aaacgcccaa agacaatctc cttacctcca gcagcacaca gcacacagtc ttctctgcaa
     1321 agggaccaag ggataaacca tgcgttccag ttcccgtagt cagtttagag aaaattccta
     1381 acctagtgaa ggcagatggt gccaatgtca aaatgaactc tacaaccact actgcagcca
     1441 cttcctcctc ctctgccgtc tccactccgc ctttaattaa gcccaccttg atgtccaagt
     1501 cagtgccacc ttcaccagag aagatcttaa atggcaaggg gattctgtca gccaccatag
     1561 acaagaagca cccaaacggc accaaaaaca gcaacaagcc ttaccggaga ctttcagaga
     1621 gagaatttga cccaaataaa cactgtggag tattggatcc cgagacaaag aaaccttgca
     1681 caagatccct cacctgcaag acacactcgc tgagccatcg gagagcagtc ccaggccgga
     1741 aaaagcaatt tgacctcctc ctggcggagc acaaagccaa gtcccgggag aaagaagtga
     1801 aagagcacct tctgacttcc gctagggaga tacttccgaa ccctcctgga ccctcgcctg
     1861 atgctccgca agcatcttcc gggagcacgg tggcagagcc gaaagtagca tccccaccaa
     1921 aatccaggcc actcaactct gtacttccca gaccatcgtc tgcaaacagc ataagcagca
     1981 gtacttcttc aaaccacagc ggctacactc cagagccccc tctgctccca gctggaggcg
     2041 accttgccag ccgactgtcc agtgatgaag gggagatgga cggagccgac gagtccgaga
     2101 agttagactg tcagttctcc acacaccacc ccagacctct tgcgttctgc tcattcggga
     2161 gtcgcctcat gggacgagga tactatgtgt ttgatagaag gtgggatcga tttcgcttcg
     2221 cactgaactc catggtagaa aaacacttga attcgcagat gtggaagcac agaagcccga
     2281 gccacagggc gtcaggtccc tcccctctgt tcaggacttg cctaaccaat ctgctgtcac
     2341 tgagcaacat tggggctgcc tgggtgtcaa ctctggagag cgtagcaccc cgctgccctc
     2401 tcaacctcgc tgcccaaact tcaggccctg aagggcccga acctggaggg atggcagccg
     2461 atgggggcgt ggaagacatt aggaagaaaa ggaacggcca agactctttt ttctttaaca
     2521 agcatttaac tctgcatcag gagacgccaa cacagtattc tctttcagcc aggaagatcc
     2581 ctcctgcggc agatagcccc atgccctcgc cagcagccca catcaccacc cccgttccag
     2641 catccgtttt gcagcctttc agcaacccca gtgctgtgta tcttccttca gctcccatca
     2701 gctcgagact cacctcttct tacataatga catcagccat gctctcagac gcagcttttg
     2761 tggcatcgcc ggacccacgc gtcctcatgt cccacaccac agctttcccc catgtggctg
     2821 caaccctcag catcatggac tcaaccttca aggccccatc cgccgtgtcc ccgataccag
     2881 ctgtcattcc ttccccatcc cacaagccat ccaaaaccaa aaccagcaaa tcctcaaaag
     2941 tgaaagacct gtccgctcgt agcgacgaat ctccaagtaa caaaaagagg aagccgcagt
     3001 cctccacttc tgcctcctcc ttatccttgc aggctcccct ctcgtctcca ttgtcagggc
     3061 cccacaaaaa gaactgcatt ctgaatgcca gttctgcttt gaactcctat caggcagccc
     3121 ctccctataa cagtctgtct gtgcacaact caaataacgg ggtgagccca ctcagtgcca
     3181 agctggagcc ctcaggacgg acctcactgc ccagcggccc catggacata gtgagacagg
     3241 tgggcgccgt gggtggcagc agtggcccct gtcccctctc cgtgccctcc cttgcactcc
     3301 atgcagggga cctctctctg gcctcacaca acgctgtgtc ttctctgccc ctctcctttg
     3361 acaaatcaga aggaaaaaag cgtaagaatt caagtcctag tagcaaagcc tgtaagatca
     3421 ctaaaatgcc tggtatgaat agcgttcaca aaaagaaccc acccagcctt cttgcaccgg
     3481 tgcccgatcc cgttaacagc acctcctctc ggcaggtaag ggagctcctg gcactgcctt
     3541 cactggctct ggggggcagg gggagctggg cagcgccctt gtttggccag gtggctcaga
     3601 caggtaacac acacatggct ccttttccca ggttccccgt aggctccgag aattcttggt
     3661 aggactttgc tagtccctat gctgagcact ttacagtaat cacttccttt agtcctcaca
     3721 acaaacccag cacagggggt aaaaaaaaaa tggccatcac ttaacagctg ggtaaaccaa
     3781 ggcacataga ctctctgagt tcccccattc ctttcgtctg tttcctatct tgaggtttaa
     3841 tatgaggcct acttcattaa agagttgtgt tgctaa
//
