LOCUS       XM_030242527            3898 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ataxin 2-like (Atxn2l), transcript variant
            X23, mRNA.
ACCESSION   XM_030242527
VERSION     XM_030242527.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..3898
                     /gene="Atxn2l"
                     /gene_synonym="A2D; A2LG; A2lp; A2RP; Atxnl2"
                     /note="ataxin 2-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 33 ESTs, 1678
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 35 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:233871"
                     /db_xref="MGI:MGI:2446242"
     CDS             1185..3152
                     /gene="Atxn2l"
                     /gene_synonym="A2D; A2LG; A2lp; A2RP; Atxnl2"
                     /codon_start=1
                     /product="ataxin-2-like protein isoform X17"
                     /protein_id="XP_030098387.1"
                     /db_xref="GeneID:233871"
                     /db_xref="MGI:MGI:2446242"
                     /translation="MYPPRSPKSAAPAPVSASCPEPPIGSAVASSASIPVTSSVVDPG
                     AGSISPASPKLSLTPTDVKELPTKEPSRNLEAQELARIAGKVPGLQNEQKRFQLEELR
                     KFGAQFKLQPSSSPETGLDPFPSRILKEEAKGKEKEVDGLLTSDPMGSPVSSKTESIL
                     DKEDKVPMAGVGGTEGPEQLPAPCPSQTGSPPVGLIKGDEKEEGPVTEQVKKSTLNPN
                     AKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMG
                     PAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPP
                     LVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIV
                     SSSTPQYPAAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSP
                     VQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPH
                     QQLPHGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPS
                     GVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSV
                     LCFPPSSLSCDPAAPLPTASPALSDPDCLLT"
ORIGIN      
        1 cagcggctac tgggaagact gcgggctggg aagctcctgc gcgcgcgctc cccgggcgta
       61 cgtgcgcgcg gatgctgtct tatgactcgg gcattggctt gccccgggga cagaccaccg
      121 gaaagggacc cccacagtca cccgtgtttg aaggtgtcta taacaattcc aggatgctgc
      181 atttcctgac agctgtagtg ggttctactt gtgacgtaaa ggtgaaaaat ggcaccactt
      241 acgagggcat tttcaagact ctgagctcaa agtttgaact ggcagttgac gcggtgcatc
      301 ggaaagcatc tgagccagca ggtgggcctc gccgggaaga cattgtggac accatggtgt
      361 ttaaaccaag cgacgttctg cttgtccact tccgaaatgt tgacttcaat tatgctacta
      421 aagataagtt cactgactca gccattgcca tgaactctaa ggtgaatgga gaacacaaag
      481 agaaggtgct tcaacgttgg gagggcggtg acagcaacag tgacgactac gatctggaat
      541 ccgatatgtc taatggatgg gatcccaatg agatgttcaa atttaatgag gagaactatg
      601 gagtgaagac cacctatgac agcagtctat cttcttacac ggttccctta gaaaaggaca
      661 actctgaaga gtttcggcag cgggagcttc gagcggccca gttggctcga gagattgagt
      721 ctagtcccca gtaccgccta cggattgcta tggaaaatga cgatgggaga acagaggagg
      781 agaagcacag tgctgttcag cggcaggggt ctgggcggga gagccccagc ttggtatcca
      841 gggaggggaa gtatatcccc ctgcctcagc gagttcgaga aggtccccgg ggaggagttc
      901 gatgcagcag ttctcgagga gggcgccctg gccttagctc tttgccacct cgtggccctc
      961 accatcttga caacagcagt cctggccctg ggtctgaggc acgtggtatc aatggaggtc
     1021 cttcccgcat gtcccccaag gcacagcggc ctctgagagg tgccaagacc ttatcttcac
     1081 ccagcaatag gccttctgga gaagcttctg ttcctccaac atctgcaggt agagagcttc
     1141 agtgaggctg gctgcaggct tgggtagttt gtggagtggg ccggatgtac cctccacggt
     1201 ctcccaagtc tgctgcccct gccccagtct cagcttcctg tcctgagcct cccattggtt
     1261 cggcagtggc gtcctctgcc tccatccctg tgacatcatc agttgtggat cctggtgcag
     1321 gctctatttc cccggcatct ccaaaactct ccctgacccc tacagatgta aaagaactcc
     1381 caaccaagga gcccagtagg aatttggaag cccaagaact ggcccgcata gctgggaaag
     1441 tccctggcct tcagaatgaa caaaaacgat ttcagttgga agaactgaga aaatttgggg
     1501 cccagtttaa gcttcaacct agtagctccc ctgagacggg cctggatcca tttccttccc
     1561 ggatcttgaa agaagaggcc aaaggaaagg agaaagaggt ggatggtcta ttgacttcag
     1621 atcctatggg atccccagtc tcctctaaga cagaatccat attggataag gaagacaaag
     1681 tgcccatggc aggagtagga gggactgagg ggccagagca gctcccagca ccttgtccca
     1741 gccaaaccgg cagtcctcca gtgggcctca tcaaggggga tgagaaagag gagggccctg
     1801 ttactgaaca agtgaagaag tctactttga accccaacgc caaggagttc aatccaacaa
     1861 aacctctgct gtctgtgaac aaatctacca gtactccaac ttcaccaggg ccccgtactc
     1921 attcaacacc ttctataccg gtgctgacag caggccagag tgggctctac agtccccagt
     1981 acatctcata tatacctcag atccacatgg gaccagctgt acaggcgcct cagatgtatc
     2041 catatcctgt atccaattcc gtgcctgggc agcagggcaa gtaccggggt gcaaaaggct
     2101 cacttcctcc tcagcgctct gaccaacacc aaccagcctc agcccctcca atgatgcagg
     2161 ctgctgctgc tgctgctggc ccacccctgg tggctgccac accctattcc tcctacatcc
     2221 cctacaaccc acagcagttc ccaggccagc ctgccatgat gcagcccatg gcacactacc
     2281 cttcacagcc ggtgttcgcc cctatgcttc aaagtaatcc acgaatgttg acatcgggaa
     2341 gccatcccca ggccatcgtg tcgtcctcca ctcctcagta ccctgctgca gagcagccta
     2401 ccccccaagc cctctatgcc actgttcacc aatcctatcc acaccatgcc acgcagctcc
     2461 atggccacca gccgcagccg gccaccacac ctactgggag ccagccacaa tcccagcatg
     2521 cggcccccag tcccgttcag caccaggcgg ggcaggcccc tcacctgggc agtggacagc
     2581 cacagcagaa tctgtaccat ccaggggccc taacaggcac gccaccttct ctaccaccgg
     2641 gaccttctgc ccagtcccct caaagcagct tcccccagcc agctgctgtg tatgccatcc
     2701 atccccacca gcagctgccc cacggcttca ccaacatggc ccatgttacc caggcccatg
     2761 tccaaactgg agtcacagca gccccgcccc cacaccctgg ggctccccac ccgccccagg
     2821 tgatgctgct gcaccccccc cagggccatg gggggccccc ccaaggcgcg gtgcccccga
     2881 gtggggtgcc tgcactctca gcttccacac cctcacccta cccctacatc ggacaccccc
     2941 aaggtgagca gcctggccag gcgcctggat ttccaggagg agccgatgac aggattctat
     3001 gtagggtggg cagaagccac agtcgccgcc gccaggggct tgctcctggc tctgtccttt
     3061 gcttccctcc gtcctcgctc agttgtgatc cagcagcccc cctccccact gcctccccag
     3121 ctctcagtga ccccgactgt ctcctgactt agccgaggta aggtcagcgc agcagacagg
     3181 gccagactgg ggcgtggggg gctgagctgg gcaactgagt aagggctctg gcctactggg
     3241 aaacagcgat tgacctgtgc ttctgacagt cccctgagac tcctcgagga ggccgctcct
     3301 ccccacaccc ctcaccccct ggacgcattg acagagggac agctgctcgg gttctaatgc
     3361 tcctgctctc tctctttccc ctccaaccag ttcaatctca tccctcccag cagctcccct
     3421 tccacccccc ggggaactga agattgtcct ggccgcgacc tgagacctcc atgagtggag
     3481 ggaagagtga tctatgtctc ttccccccag cagctgggac cagtcctagc cccgtcccca
     3541 acccctttcc cttggggagt tgggggaatt cctgccaagc accttgaatg ggaggggtcc
     3601 ttcaagtggg ccgggctggg gtccaacggg ggtgggggag gttcctgctc tgccccagct
     3661 gggtcctacc cagtcttgtc ctcccatcct ctcatctatt cccccccgcc ccctggagac
     3721 ggaagatctt ttattttcta ttatttataa cctcagactt gggccccctg ttcttctcca
     3781 ttaacttgag tgttctgtgt gagaccaaca gacagatgcc tcaaggactt ttacttttta
     3841 ttacataaaa aaattaaaaa aaaataaaat aaaaaaataa aattttaaac taacttaa
//
