LOCUS       XM_030254248            6065 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ataxin 2 (Atxn2), transcript variant X17,
            mRNA.
ACCESSION   XM_030254248
VERSION     XM_030254248.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030254248.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..6065
                     /gene="Atxn2"
                     /gene_synonym="9630045M23Rik; ATX2; Sca2"
                     /note="ataxin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 49 ESTs, 554
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:20239"
                     /db_xref="MGI:MGI:1277223"
     CDS             153..3527
                     /gene="Atxn2"
                     /gene_synonym="9630045M23Rik; ATX2; Sca2"
                     /codon_start=1
                     /product="ataxin-2 isoform X15"
                     /protein_id="XP_030110108.1"
                     /db_xref="GeneID:20239"
                     /db_xref="MGI:MGI:1277223"
                     /translation="MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEK
                     STESSSGPKREEIMESVLFKCSDFVVVQFKDTDSSYARRDAFTDSALSAKVNGEHKEK
                     DLEPWDAGELTASEELELENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLER
                     DNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNCSDREGHGP
                     NTRDNKYIPPGQRNREVLSWGSGRQSSPRMGQPGPGSMPSRAASHTSDFNPNAGSDQR
                     VVNGVFILSFISFVLSGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPS
                     RPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLE
                     FVSHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQSSIGNSPSGPV
                     LASPQAGIIPAEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGSKE
                     NVKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLSKN
                     REGEKSRDLIKDKTEASAKDSFIDSSSSSSNCTSGSSKTNSPSISPSMLSNAEHKRGP
                     EVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPKPSTTPT
                     SPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQA
                     KTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQP
                     LVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYACP
                     KLPYNKETSPSFYFAISTGSLAQQYAHPNAALHPHTPHPQPSATPTGQQQSQHGGSHP
                     APSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQT
                     VFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALA
                     QSALQPIPVSTTAHFPYMTHPSGEACVCRGRRGTPSVLLAEVEWQAGPVLQAANLTSE
                     AHPSVHRRDRDGQETSGSVCVLLVQGWLEKQQPHSG"
ORIGIN      
        1 tttcattttc atcttttagg aacattctgt gaataaatgg aagtaagagc tgagttaata
       61 attgaaaagg tggaggaaat cgaggtcgga acagtagcaa aggactgcct cagcctacga
      121 tttcttttga tggaatctat gcaaacgtga ggatggttca tatacttacg tcagttgttg
      181 gatcgaaatg tgaagtacaa gtgaaaaacg gaggcatata tgaaggagtt tttaaaacat
      241 acagtcctaa gtgtgacttg gtacttgatg ctgcacatga gaaaagtaca gaatccagtt
      301 cggggccaaa acgtgaagaa ataatggaga gtgttttgtt caaatgctca gacttcgttg
      361 tggtacagtt taaagataca gactccagtt atgcacggag agatgctttt actgactctg
      421 ctctcagcgc aaaggtgaat ggtgagcaca aggagaagga cctggagccc tgggatgcag
      481 gggagctcac ggccagcgag gagctggagc tggagaatga tgtgtctaat ggatgggacc
      541 ccaatgacat gtttcgatat aatgaagaga attatggtgt ggtgtccaca tatgatagca
      601 gtttatcttc atatacggtt cctttagaaa gggacaactc agaagaattt cttaaacggg
      661 aggcaagggc aaaccagtta gcagaagaaa ttgaatccag tgctcagtac aaagctcgtg
      721 tcgcccttga gaatgatgac cggagtgagg aagaaaaata cacagcagtc cagagaaact
      781 gcagtgaccg ggaggggcat ggccccaaca ctagggacaa taaatatatt cctcctggac
      841 aaagaaacag agaagtccta tcctggggaa gtgggagaca gagctcacca cggatgggcc
      901 agcctgggcc aggctccatg ccgtcaagag ctgcttctca cacttcagat ttcaacccga
      961 acgctggctc agaccaaaga gtagttaatg gagtttttat actttccttc atatcatttg
     1021 ttctgtcagg tgttccctgg ccatcgcctt gcccatctcc ttcctctcgc ccaccttctc
     1081 gctaccagtc aggtcccaac tctcttccac ctcgggcagc cacccctaca cggccgccct
     1141 ccaggccccc ctcgaggccc tccagacccc cgtctcaccc ctctgctcat ggttctccag
     1201 ctcctgtctc tactatgcct aaacgcatgt cttcagaagg acccccaagg atgtctccaa
     1261 aggcacagcg ccaccctcgg aatcacagag tctctgctgg gagaggctcc atgtctagtg
     1321 gcctagaatt tgtatcccac aatcccccaa gtgaagcagc tgctcctcca gtggcaagga
     1381 ccagtcctgc agggggaacg tggtcctcag tggtcagtgg ggttccaagg ttatctccca
     1441 aaactcacag acccaggtct cccaggcaga gcagcattgg aaactctccc agcgggcctg
     1501 tgcttgcttc tccccaagct ggcatcatcc ctgcagaagc cgtttccatg cctgttcccg
     1561 ccgcatctcc gactcctgcc agccctgcat ccaacagagc actgacccca tctattgagg
     1621 caaaagattc caggcttcaa gatcagaggc agaactctcc tgcagggagt aaagaaaatg
     1681 ttaaagcaag tgaaacatca cctagctttt caaaagctga caacaaaggt atgtcaccag
     1741 ttgtttctga acacagaaaa cagattgatg acttaaagaa gtttaagaat gattttaggt
     1801 tacagccaag ctctacatct gaatctatgg atcaactact aagcaaaaat agagaaggag
     1861 aaaagtcacg agatttgatt aaagataaaa cggaagcaag tgctaaggat agtttcattg
     1921 acagcagcag cagcagcagc aactgtacca gtggcagcag caagaccaac agccctagca
     1981 tctccccttc catgcttagt aatgcagagc acaagagggg gcctgaggtc acatcccaag
     2041 gggtgcagac ttccagccca gcctgcaaac aagagaagga tgacagagaa gagaagaaag
     2101 acacaacaga gcaggttagg aaatcgacat tgaatcccaa tgcaaaggag ttcaaccctc
     2161 gttctttctc tcagccaaag ccttctacta ccccaacgtc acctcggcct caagcacaac
     2221 ccagcccatc tatggtgggt catcagcagc cagctccagt gtacactcag cctgtgtgct
     2281 tcgcacccaa tatgatgtat cccgtcccag tgagcccggg cgtacaacct ttatacccaa
     2341 tacctatgac gcccatgcct gtgaaccaag ccaagacata tagagcaggt aaagtaccaa
     2401 atatgcccca acagcgacaa gaccaacatc atcaaagcac catgatgcac ccagcctccg
     2461 cggcagggcc acccatcgta gccaccccgc ccgcttactc cactcagtac gttgcctaca
     2521 gccctcagca gtttcccaat cagcctttgg tccagcatgt gccgcattat cagtctcagc
     2581 atcctcatgt gtacagtcct gtcatacaag gtaatgccag gatgatggca ccaccagcac
     2641 atgctcagcc tggtttagtg tcttcttcag ctgctcagtt cggggctcac gagcagacgc
     2701 acgccatgta tgcatgtccc aaattaccat acaacaagga gacaagccct tctttctact
     2761 ttgccatttc caccggctcc ctcgctcagc agtatgcaca tcctaatgcc gccctgcatc
     2821 cacatactcc ccatcctcag ccttcggcca ctcccaccgg acagcagcaa agccagcatg
     2881 gtggaagtca ccctgcaccc agtcctgttc agcaccatca gcaccaggct gcccaggctc
     2941 ttcatctggc cagtccacag cagcagtcgg ccatttatca tgcggggctg gcaccaacac
     3001 caccttccat gacacctgcc tctaatacac agtctccaca gagcagtttc ccagcagcac
     3061 aacagacagt cttcaccatc cacccttctc atgttcagcc ggcatacacc accccacccc
     3121 acatggccca cgtacctcag gctcatgtac agtcaggaat ggttccttct catccaactg
     3181 cccatgcgcc aatgatgcta atgacgacac agccacccgg cggtccccag gccgccctcg
     3241 ctcaaagtgc actacagccc attccagtct cgacaacagc gcatttccct tatatgacgc
     3301 acccttcagg tgaggcgtgt gtgtgcaggg gccgccgggg caccccgagc gttctgctcg
     3361 cagaggtaga atggcaggca ggaccagtgc ttcaggctgc aaacctgact agcgaggccc
     3421 atccaagtgt gcacaggagg gatcgtgacg gtcaggaaac atcaggctct gtgtgtgttc
     3481 tgctggttca gggttggctt gagaagcagc agcctcattc tgggtagccg atgcatgccg
     3541 aggactcagt tggccttcct ggttatgtat gtatgatagg ctggacaggg cagcgtggtc
     3601 cgtcctgagt cctttatagg ctgatgtggg gggtttatgc ccatggccaa gtttgatcgt
     3661 agcttggagg agagcactgg tgaacacgtg ctgtgtgcgg actggtctga gtgtagtgtt
     3721 agccccagcc tgtgccctga cacaggacgc ccatgatgtc tcgtactgat ggctgctgtg
     3781 acgacacctg tcttccctgt gacttggaaa gcagtggtgc ttggctagtg tagtgggagg
     3841 gggtgtgaag gcctgctcca caagcagcaa gtccaggact tgtatctgaa gtggtttacg
     3901 tctgactggt ttgtttctcc tcaccccctt ccctccccaa ccctaccttg gctgcagttg
     3961 ggggagaggg gcagcattaa ccctccagtc ttactcacta gcacaggagt agttgacagt
     4021 cgtgtgctgc ggacactagg ctggcgggca gtggtgcctg tgttgtttaa atagccactt
     4081 ttctttttta cagtacaagc ccaccaccaa cagcagttgt aaggctgccc tggaggaacc
     4141 gaaaggccaa atcccctcct cccttctcct gcttctgcca accggaagca cagaaaacta
     4201 gaacttcatt gattttgttt tttaaaagat acactgattt aacatctgat aggaatgcta
     4261 acagctcact tgcagtggag gatgttttgg accgagtaga ggcatgtagg gacttgtggc
     4321 tgttccataa ttccatgtgc tgttgcaggg tcctgcaagt acccagctct gcttgctgaa
     4381 actggaagtt atttattttt taatggccct tgagagtcat gaacacatca gctagcaaca
     4441 gaagtaacaa gagtgattct tgctgctatt accgctttaa aaaaaaaaaa tcaagacttg
     4501 gaacgccctt ttactaaact tgacagaagt tcagtaaatt cttaccgcca aactgacgga
     4561 ttattattta taaatcaagt ttgatgaggc gatcactgtc tacagtggtt caacttttaa
     4621 gttaagggaa aacttttact ttgtagataa tataaaataa aaactaaaaa aaaaaattaa
     4681 aaaataaaaa aagttttaaa aactgatacc cagttagtgt gtgtttatgt tgactcctgc
     4741 tgctgtggga ggtagacccc agggaagaca ggctggttgt gctgctccaa tctctgagga
     4801 ggtgctgacc aaatgacttt tcttcttcac ctttagttct ggctcaaggt atctagaaaa
     4861 agtcaagact gtgattccct ctcgggtgga ttagcagttg gcttcagcag aaggcaggct
     4921 ggccagaggt gggcagcgtt caaaagtcca catctgcaag caggtgcaga ctgtaagctc
     4981 acttttcctt gttgatctga gttatcccag ttcagttctg tgttaccagt agggggcaga
     5041 agctccttct ttacagagga atctgaccag gctcaaggtg tggccacagt ggctaagcac
     5101 ttgtctagta gcacagagcc ttgtccctcc tcagtgtagc cagggattgg ggaggggggg
     5161 gcagcacaga atgaggccag gctgcccgaa agggaggcag gcaagtggga tgggtgtgtg
     5221 gatgcagaga tcatggttgt aatactggaa acctttttaa ttgacataca gcaatttgta
     5281 cattgtagca aaatttgcat tattcaagaa taagttactc atacagtaca taaaacgaag
     5341 atttgccaaa taccttctgc tgtaatgata gaagatgaga ttccctgttt ctgtggtgac
     5401 aatgctgctt attccggcca cacactggcc attagatgtg tcttcactag gaggcagtgg
     5461 gtgacagttt atcacttggt gtttgcacca aggtaatatt aaacaagaga ctgagccctc
     5521 agggaagggg tgaagcctta ctttaagaaa cttaggtaaa gatagtgttg tgtggcccga
     5581 gattgtaatg atccctattc ctttctccta caccatccag aaatgatcag aggcagaaga
     5641 tttatacaga taaagccata tggattgctg gtaaagtcaa ggcaggttag ttgacccaac
     5701 tctttggtgc tggtgacttt tagtttgtag ttgagtactc aggagaagga agcaagggta
     5761 cggggactgt cgagccagtg gtggccagta aagactgctg gggtgggaac ggtgcctggt
     5821 gccaacacac tgggagggca tctggcctgg agcttcgcaa acctgcccgt ccccttcagc
     5881 caactggacc tactctagca gaaaggaaag gtgttggctt agtgttgtca ctctgtccca
     5941 cagtcacgag aatacctttt tgccttatgt tttctgttat cttagacact tcttgaaagg
     6001 aagctgtcca cagtgggggt ggaggtgctg gtttacagcg tcgggcaagt ctctcttctg
     6061 aaggc
//
