LOCUS       NM_015731               3529 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ATPase, class II, type 9A (Atp9a), transcript variant
            1, mRNA.
ACCESSION   NM_015731
VERSION     NM_015731.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3529)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3529)
  AUTHORS   Meng,T., Chen,X., He,Z., Huang,H., Lin,S., Liu,K., Bai,G., Liu,H.,
            Xu,M., Zhuang,H., Zhang,Y., Waqas,A., Liu,Q., Zhang,C., Sun,X.D.,
            Huang,H., Umair,M., Yan,Y. and Feng,D.
  TITLE     ATP9A deficiency causes ADHD and aberrant endosomal recycling via
            modulating RAB5 and RAB11 activity
  JOURNAL   Mol Psychiatry 28 (3), 1219-1231 (2023)
   PUBMED   36604604
REFERENCE   3  (bases 1 to 3529)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3529)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   5  (bases 1 to 3529)
  AUTHORS   Tamplin,O.J., Cox,B.J. and Rossant,J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   6  (bases 1 to 3529)
  AUTHORS   Paulusma,C.C. and Oude Elferink,R.P.
  TITLE     The type 4 subfamily of P-type ATPases, putative aminophospholipid
            translocases with a role in human disease
  JOURNAL   Biochim Biophys Acta 1741 (1-2), 11-24 (2005)
   PUBMED   15919184
  REMARK    Review article
REFERENCE   7  (bases 1 to 3529)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   8  (bases 1 to 3529)
  AUTHORS   Douglas,K.R. and Camper,S.A.
  TITLE     Partial transcriptome of the developing pituitary gland
  JOURNAL   Genomics 70 (3), 335-346 (2000)
   PUBMED   11161784
REFERENCE   9  (bases 1 to 3529)
  AUTHORS   Halleck,M.S., Lawler,J.F. Jr., Blackshaw,S., Gao,L., Nagarajan,P.,
            Hacker,C., Pyle,S., Newman,J.T., Nakanishi,Y., Ando,H.,
            Weinstock,D., Williamson,P. and Schlegel,R.A.
  TITLE     Differential expression of putative transbilayer amphipath
            transporters
  JOURNAL   Physiol Genomics 1 (3), 139-150 (1999)
   PUBMED   11015572
  REMARK    Publication Status: Online-Only
REFERENCE   10 (bases 1 to 3529)
  AUTHORS   Halleck,M.S., Pradhan,D., Blackman,C., Berkes,C., Williamson,P. and
            Schlegel,R.A.
  TITLE     Multiple members of a third subfamily of P-type ATPases identified
            by genomic sequences and ESTs
  JOURNAL   Genome Res 8 (4), 354-361 (1998)
   PUBMED   9548971
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929248.12 and AL844575.4.
            
            On Nov 17, 2006 this sequence version replaced NM_015731.2.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094551.1, AF152243.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-119               AL929248.12        51873-51991         c
            120-264             AL929248.12        21023-21167         c
            265-378             AL929248.12        16386-16499         c
            379-487             AL929248.12        15314-15422         c
            488-546             AL844575.4         189875-189933       c
            547-598             AL844575.4         188208-188259       c
            599-693             AL844575.4         186250-186344       c
            694-774             AL844575.4         182622-182702       c
            775-850             AL844575.4         180885-180960       c
            851-927             AL844575.4         175051-175127       c
            928-1088            AL844575.4         174110-174270       c
            1089-1231           AL844575.4         173701-173843       c
            1232-1344           AL844575.4         172386-172498       c
            1345-1557           AL844575.4         166915-167127       c
            1558-1719           AL844575.4         160838-160999       c
            1720-1812           AL844575.4         153085-153177       c
            1813-1896           AL844575.4         152403-152486       c
            1897-2067           AL844575.4         151477-151647       c
            2068-2166           AL844575.4         148438-148536       c
            2167-2256           AL844575.4         147700-147789       c
            2257-2401           AL844575.4         147464-147608       c
            2402-2466           AL844575.4         146594-146658       c
            2467-2622           AL844575.4         142771-142926       c
            2623-2687           AL844575.4         139540-139604       c
            2688-2796           AL844575.4         138791-138899       c
            2797-2854           AL844575.4         137979-138036       c
            2855-3058           AL844575.4         136410-136613       c
            3059-3529           AL844575.4         133347-133817       c
FEATURES             Location/Qualifiers
     source          1..3529
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 88.99 cM"
     gene            1..3529
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /note="ATPase, class II, type 9A"
                     /db_xref="GeneID:11981"
                     /db_xref="MGI:MGI:1330826"
     exon            1..119
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            120..264
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            265..378
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            379..487
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            488..546
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            547..598
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            599..693
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            694..774
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            775..850
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            851..927
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1088
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1231
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1344
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1557
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1719
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1720..1812
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1813..1896
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..2067
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2166
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2167..2256
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2257..2401
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2402..2466
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2467..2622
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2623..2687
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2688..2796
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2797..2854
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            2855..3058
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     exon            3059..3529
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3509..3514
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /note="hexamer: GATAAA"
     polyA_site      3529
                     /gene="Atp9a"
                     /gene_synonym="IIa"
                     /note="major polyA site"
ORIGIN      
        1 cggggcggcg cggaggccgc ggggagcgca gggggcgcgg cgggcggcga catgacggac
       61 agcatcccgc tgcagcccgt gcgccacaag aagcgggtgg acagtaggcc gcgcgcgggg
      121 tgctgtgagt ggctgagatg ttgcggtgga ggggagccca ggccccgtac tgtctggttg
      181 ggacaccccg agaagaggga ccagcggtac cctcgaaatg tcatcaacaa ccagaagtac
      241 aatttcttca catttcttcc tggggtgttg ttcagccagt tcagatactt cttcaacttc
      301 tacttcctgc ttctcgcctg ctcgcagttc gtcccagaga tgaggcttgg cgccctgtac
      361 acctactggg ttcctctggg cttcgtgctg gctgtcacca tcatccgtga ggcagtagag
      421 gagatccgat gttatgtgcg tgacaaggag atgaactccc aggtctacag ccggctcacg
      481 tcacgaggga ccgtgaaggt gaagagttca aacatccagg tgggagacct catccttgtg
      541 gaaaagaacc agcgggtccc tgctgacatg atcttcctga ggacgtcaga gaaaaacggc
      601 tcttgcttct tgcgcacgga tcagctggat ggagagacag actggaagct tcggctcccg
      661 gtggcctgca cacagaggct tcccacggct gctgacctcc tgcagattcg gtcctatgtg
      721 tacgctgaag agcccaacat cgacattcac aacttcctgg ggactttcac cagggaagac
      781 agtgaccctc cgatcagtga gagtctgagc attgagaaca cgctgtgggc cggcaccgtc
      841 atagcatcag gcactgttgt aggcgttgtt ctctacactg gcagagaact gcggagtgtc
      901 atgaatactt ccgaccccag aagtaagatt ggcctgttcg acctggaggt gaactgcctc
      961 accaagatcc tgtttggtgc gctggtggtg gtgtcgctgg tcatggtggc cctgcagcac
     1021 tttgccggcc gctggtacct gcagatcatc cgcttcctgc tcctgttttc caacatcatt
     1081 cctatcagct tgcgtgtgaa cttggacatg ggcaagatcg tgtacagctg ggtgatccgc
     1141 agggattcca aaatccccgg gaccgtggtt cgttccagca caattcctga gcagctgggc
     1201 aggatttcgt acttgctcac agacaagaca ggaaccctga cccagaatga gatggtgttc
     1261 aagcggctgc acctgggtac ggtggcctac ggcctggact ccatggacga agtgcagagt
     1321 cacatcttca gcatttacac ccagcaatcc caggatccac ctgctcagaa gggccccacg
     1381 gtcaccacca aggttcggag gaccatgagc agccgtgtcc acgaggctgt gaaggccatt
     1441 gcactctgcc acaacgtgac acccgtgtac gagtccaatg gtgtgacgga ccaggctgag
     1501 gctgagaagc agtttgagga ctcctgccga gtgtaccagg catccagccc ggatgaggtg
     1561 gctctggtcc agtggacaga aagtgtggga ctgacgctgg tgggtcgaga ccagtcctcc
     1621 atgcagctga ggacccctgg tgaccaggtc ctgaatctca ctatccttca ggtcttcccg
     1681 ttcacctatg agagcaagcg gatgggcatc atcgtgcggg atgagtccac gggggaaatc
     1741 acgttctaca tgaagggagc agacgtcgtc atggctggca ttgtccagta caacgactgg
     1801 ctggaggagg agtgtggcaa catggcccgg gagggactac gtgtgctggt ggtagccaag
     1861 aagtccctca cagaggagca gtaccaagac tttgaagccc gctacgtcca ggctaagctg
     1921 agtgtgcatg accgctcgct gaaggtggcc acggtgatcg agagcctgga gatggagatg
     1981 gagctgctgt gcctgactgg tgtggaggac cagctgcagg cagatgtcag gcccacgctg
     2041 gagacgctgc gcaacgctgg catcaaggtt tggatgctaa caggggacaa gctggagaca
     2101 gccacgtgca cagccaagaa cgcacatctg gtgaccagaa accaagatat ccatgttttc
     2161 cgactggtga ccaaccgcgg ggaggcccac ctggagctga atgccttccg taggaagcat
     2221 gactgtgccc tggtcatctc tggagactcc ctggaggttt gcctcaaata ctatgagtac
     2281 gagttcatgg aactggcctg ccagtgcccg gctgtggtgt gctgccgctg tgccccaacc
     2341 cagaaggccc agattgttcg gctgctccag gaacgcaccg ggaagctcac ctgtgcagta
     2401 ggggacggag gcaatgacgt cagcatgatc caggaatccg actgcggcgt gggcgtggag
     2461 ggcaaggaag ggaagcaggc ctcgctggca gcggacttct ccatcaccca gttcaagcat
     2521 ctcggccgct tgctcatggt gcacggtcgg aacagctaca agcgctcggc ggccctcagt
     2581 cagtttgtga tccacaggag cctctgcatc agcaccatgc aggctgtctt ctcgtctgtg
     2641 ttctactttg catccgttcc tctctaccaa ggcttcctga tcattgggta ttctaccatc
     2701 tacacgatgt ttcccgtgtt ctccctggtt ttggacaaag acgtgaagtc ggaagtcgcc
     2761 atgttgtatc ctgagctcta caaggacctg cttaaggggc ggccactgtc ctacaagacg
     2821 ttcttaattt gggtgttaat cagcatctat caagggagca ccatcatgta cggggcgctg
     2881 ctgctgttcg agtcggagtt tgtacacatc gtggcaatct ccttcacatc cctcatcctc
     2941 actgagctac tgatggtggc gctcaccatc cagacgtggc actggctcat gacagtggcc
     3001 gagctactca gcctggcctg ctacattgcc tccctggtgt tcctccatga gttcatcgat
     3061 gtctacttca ttgccaccct gtcattcctc tggaaggtgt ccgtcatcac cttggtcagc
     3121 tgtctccccc tctatgtcct caagtacctg cggagacggt tctccccacc cagctactcg
     3181 aagctcactt cctaaagctg cagggctgcc tcgggcaggg cctccggcct ccggcgctct
     3241 cccaggagga ggtcaagttc cacacgcacg agccgcctca gctggacggt gcagtcatgg
     3301 ctggcacatg aggcttcgct gaggcgacac tgggcaccta atggggatgg aacattggtg
     3361 gaaccggagg gaggggcctg agagctgtac ctatcagaac cttgggtgct aagctgtgct
     3421 gagggggaag acgtgggacc ggatggcccg tctgaggttt gtggggtcac tgtgcaagct
     3481 tccttatggt ttgaacctct tgtcatgtga taaaagtctc tgtctcgaa
//
