LOCUS       NM_025272                800 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus ATPase, H+ transporting, lysosomal V0 subunit E
            (Atp6v0e), mRNA.
ACCESSION   NM_025272
VERSION     NM_025272.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Nishi,T., Kawasaki-Nishi,S. and Forgac,M.
  TITLE     Expression and function of the mouse V-ATPase d subunit isoforms
  JOURNAL   J Biol Chem 278 (47), 46396-46402 (2003)
   PUBMED   12963731
REFERENCE   3  (bases 1 to 800)
  AUTHORS   Ueda,T., Ugawa,S. and Shimada,S.
  TITLE     A novel putative M9.2 isoform of V-ATPase expressed in the nervous
            system
  JOURNAL   Neuroreport 14 (1), 25-30 (2003)
   PUBMED   12544825
  REMARK    GeneRIF: A cDNA encoding a novel putative neuron-specific isoform
            of vacuolar proton-translocating ATPase (V-ATPase), NM9.2, was
            isolated from rat and mouse.
REFERENCE   4  (bases 1 to 800)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 800)
  AUTHORS   Ludwig,J., Kerscher,S., Brandt,U., Pfeiffer,K., Getlawi,F.,
            Apps,D.K. and Schagger,H.
  TITLE     Identification and characterization of a novel 9.2-kDa membrane
            sector-associated protein of vacuolar proton-ATPase from chromaffin
            granules
  JOURNAL   J Biol Chem 273 (18), 10939-10947 (1998)
   PUBMED   9556572
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK017760.1 and BY707658.1.
            
            On Jul 27, 2004 this sequence version replaced NM_025272.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU515576.1, DV060517.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-712               AK017760.1         3-714
            713-800             BY707658.1         688-775
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 13.46 cM"
     gene            1..800
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /note="ATPase, H+ transporting, lysosomal V0 subunit E"
                     /db_xref="GeneID:11974"
                     /db_xref="MGI:MGI:1328318"
     exon            1..183
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /inference="alignment:Splign:2.1.0"
     exon            184..231
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /inference="alignment:Splign:2.1.0"
     exon            232..361
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /inference="alignment:Splign:2.1.0"
     exon            362..797
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      768..773
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /note="hexamer: AATAAA"
     polyA_site      797
                     /gene="Atp6v0e"
                     /gene_synonym="Atp6k; Atp6v0e1; M9.2"
                     /note="major polyA site"
ORIGIN      
        1 gatcacgtga gcctctgttg acacttccgg gtgggacgag agcgaggctc cggaccgatt
       61 cggctgctgg ggcgcaggca tggcatacca cggccttact gtgcctttga tcgtgatgag
      121 cgtgttctgg ggcttcgtgg gcctcctcgt gccctggttt atccccaagg gtcctaaccg
      181 gggagttatc atcaccatgt tggtgacttg ttcagtttgc tgctatctct tttggctgat
      241 tgcaattctg gcacagctca atcctctgtt tggaccacag ttgaaaaatg aaaccatctg
      301 gtatctgaag taccactggc cttgaggatg aagacgcgct gcacagtgcc taggcactga
      361 ggtcgcagac agaagccttc tgtgcagaat cacctgcaca tcagaccttc ctccatagcc
      421 cacttcgggc gttacctgcc ttacacttga agatcttcct ctgcatacag tattttttcc
      481 cttcaccttt tttacactct gaattatgtg cctgcgtagc tgcctctgag atgtgtctgc
      541 actccactgt ttcgggaaat gtgttactct tatcttgaag cctgtggctt tgaatatggc
      601 tcttgccagc tcacaacatg agagtcagcg atgtgtttaa gaattgctgc gagacaaaca
      661 agactcggcg ggacagtcag gagtgcctgc tcaagaggag ccctacccca gcagatgtac
      721 accaagctct attttcagga tgaatttctt acttctacat ctttgggaat aaattatttt
      781 tcttctttct atggaaaaaa
//
