LOCUS       NM_001145879            1176 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus ATPase, H+ transporting, lysosomal accessory protein
            1-like (Atp6ap1l), mRNA.
ACCESSION   NM_001145879 XM_487300 XM_911870
VERSION     NM_001145879.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ050414.1, CX238982.1 and AC108947.5.
            
            On or before Mar 21, 2009 this sequence version replaced
            XM_911870.2, XM_487300.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KJ700309.1, CX238982.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                CJ050414.1         2-60
            60-771              CX238982.1         1-712
            772-1176            AC108947.5         84669-85073         c
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 46.45 cM"
     gene            1..1176
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /note="ATPase, H+ transporting, lysosomal accessory
                     protein 1-like"
                     /db_xref="GeneID:435376"
                     /db_xref="MGI:MGI:3648665"
     exon            1..158
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
     exon            159..199
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
     exon            200..261
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
     exon            262..479
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
     exon            480..530
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
     exon            531..771
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
     exon            772..1176
                     /gene="Atp6ap1l"
                     /gene_synonym="EG435376"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctgctctg cttgctctac aaattaacag atgcgcttgg cttgaagaag catacacttc
       61 ttgatgggaa gaaaactctt gtttagtttc tcacttttgt tcttatgtat ggtgttttca
      121 gtcagtttgg atcagatact tgccaggaag aatgtaggtt ctcaagagtc ttccagtaaa
      181 gaagtggttg tacggaatgg tcaaaagaat agtggagagg tgaaaccagt acagaatttc
      241 acaaggatac ccattgcaca gacttttaac tacaatctga gcaacaaacc ctggagtacg
      301 ttcagccatc acaaccctgt tcagttctcc agggacggga ttccctgcat actcttctgg
      361 actaaaagaa tcacagttaa atttaagaat cagacgtggc tggacctcac agacgaagca
      421 cttggtcaga atactacagt ggacactggc aactctaact gcagcgagga aagtgccacg
      481 ttgtctttaa agtttggtga tgatgaagat cccaaggata ttgacatacg gttcacccta
      541 accaattaca acaagctggc cagccagagt tggtttagtt tacaccgcgt cgagataatc
      601 ttcaacaatt cggtgcaagc aacttttaac gcaaccggta tatatgctct gtcaacttac
      661 tcctaccgct gccaacgggt cagcagcctg cggcggaatg atgccctact gttgcttagc
      721 agctcagatg atgtgacaag cctgtgggag gtcacgttta ttgatttcca gatccaaggc
      781 ttctccatca agggggcaca gtttgctcag gcccgagact gcagctcttc cttctcaccg
      841 gctattctga tcggtctggc catgtctctg attctgttgc tggtgctggc ctatgcgttg
      901 catatgctca tctacctgcg ctatctggac cgtcattatg agtttatcac ctctcctgac
      961 cacttcccgt ctctgagagc gttggacaca ggagaggaga aggaacttct gggcagccag
     1021 ggagccgaat gctatgagct aaggaaccaa cagatctgca aaatctacat ttaacagcac
     1081 gagtttctgt cccctcaccg aggccaagcc atctccgaaa gactctgttc tcttttgtga
     1141 tgtctgactt gtgaattgtt tgattaaaaa aagaga
//
