LOCUS       NM_027360                399 bp    mRNA    linear   ROD 05-AUG-2024
DEFINITION  Mus musculus ATP synthase membrane subunit j (Atp5mj), transcript
            variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_027360
VERSION     NM_027360.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB618895.1, AK008333.1 and AC132623.4.
            
            On Mar 30, 2018 this sequence version replaced NM_027360.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY708042.1, BB618895.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849375,
                                           SAMN00849380 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BB618895.1         2-33
            33-397              AK008333.1         2-366
            398-399             AC132623.4         146425-146426       c
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 61.14 cM"
     gene            1..399
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /note="ATP synthase membrane subunit j"
                     /db_xref="GeneID:70257"
                     /db_xref="MGI:MGI:1917507"
     exon            1..86
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..263
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /note="6.8 kDa mitochondrial proteolipid protein; ATP
                     synthase subunit ATP5MPL, mitochondrial; ATP synthase
                     membrane subunit 6.8PL"
                     /codon_start=1
                     /product="ATP synthase subunit ATP5MJ, mitochondrial"
                     /protein_id="NP_081636.1"
                     /db_xref="CCDS:CCDS36566.1"
                     /db_xref="GeneID:70257"
                     /db_xref="MGI:MGI:1917507"
                     /translation="MFQTLIQKVWVPMKPYYTQVYQEIWVGVGLMSLIVYKIRSADKR
                     SKALKGPAPAHGHH"
     exon            87..210
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /inference="alignment:Splign:2.1.0"
     exon            211..234
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /inference="alignment:Splign:2.1.0"
     exon            235..399
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /inference="alignment:Splign:2.1.0"
     regulatory      376..381
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /note="hexamer: AATAAA"
     polyA_site      398
                     /gene="Atp5mj"
                     /gene_synonym="2010107E04Rik; 9430003J03Rik; Atp5mpl; MLQ;
                     Mp68"
                     /note="major polyA site"
ORIGIN      
        1 aggccctgcg cggcgcctgc gtgctctgtg acctttccca ttctgtagca gaatttggtg
       61 ttgcctgtgg tcttggtccc gcggagatgt ttcaaacctt gattcaaaaa gtctgggtcc
      121 ccatgaaacc ctactatacc caggtttacc aggaaatttg ggtaggagtg gggttaatga
      181 gcctcatcgt atataaaatc aggagtgctg ataaaagaag taaagctttg aaaggtcctg
      241 cacctgccca tggccatcac taactgctcc gaatccacaa gatgaagacg tcggctaaac
      301 ttgagcaagc tttgttagat gggaacatgg aacatcactg tacacttatc taagtaccat
      361 ttataatgtg gcattaataa atgtatctgt gaataccac
//
