LOCUS       NM_175650               4535 bp    mRNA    linear   ROD 26-NOV-2024
DEFINITION  Mus musculus ATPase type 13A5 (Atp13a5), transcript variant 1,
            mRNA.
ACCESSION   NM_175650
VERSION     NM_175650.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4535)
  AUTHORS   Guo,X., Xia,S., Ge,T., Lin,Y., Hu,S., Wu,H., Xie,X., Zhang,B.,
            Zhang,S., Zeng,J., Chen,J.F., Montagne,A., Gao,F., Ma,Q. and
            Zhao,Z.
  TITLE     Atp13a5 Marker Reveals Pericyte Specification in the Mouse Central
            Nervous System
  JOURNAL   J Neurosci 44 (43), e0727242024 (2024)
   PUBMED   39261008
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4535)
  AUTHORS   Shah,K., King,G.D. and Jiang,H.
  TITLE     A chromatin modulator sustains self-renewal and enables
            differentiation of postnatal neural stem and progenitor cells
  JOURNAL   J Mol Cell Biol 12 (1), 4-16 (2020)
   PUBMED   31065682
REFERENCE   3  (bases 1 to 4535)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   4  (bases 1 to 4535)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   5  (bases 1 to 4535)
  AUTHORS   Schultheis,P.J., Hagen,T.T., O'Toole,K.K., Tachibana,A.,
            Burke,C.R., McGill,D.L., Okunade,G.W. and Shull,G.E.
  TITLE     Characterization of the P5 subfamily of P-type transport ATPases in
            mice
  JOURNAL   Biochem Biophys Res Commun 323 (3), 731-738 (2004)
   PUBMED   15381061
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK083121.1 and AK158355.1.
            
            On Sep 3, 2009 this sequence version replaced NM_175650.3.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK083121.1, AK158355.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3583              AK083121.1         2-3584
            3584-3834           AK158355.1         3404-3654
            3835-4311           AK083121.1         3836-4312
            4312-4535           AK158355.1         4134-4357
FEATURES             Location/Qualifiers
     source          1..4535
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 20.03 cM"
     gene            1..4535
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /note="ATPase type 13A5"
                     /db_xref="GeneID:268878"
                     /db_xref="MGI:MGI:2444068"
     exon            1..258
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             196..3846
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /EC_number="3.6.3.-"
                     /note="isoform 1 is encoded by transcript variant 1;
                     probable cation-transporting ATPase 13A5; P5-ATPase"
                     /codon_start=1
                     /product="probable cation-transporting ATPase 13A5 isoform
                     1"
                     /protein_id="NP_783581.2"
                     /db_xref="CCDS:CCDS28095.1"
                     /db_xref="GeneID:268878"
                     /db_xref="MGI:MGI:2444068"
                     /translation="MEKSKKDGHQAVLNEGEENELEVFGYHTQNLRRALCLVTAILTL
                     GAVQLMFYWRPEWWVWTSCIPCPLQEADTILLRTTDEFRRYMRKKVFCLHLSTLKFPI
                     SKNPEEPLVADHHSVINQAVMKPELKLRCIQVQKIRYVWDFLKKRFQKVGLLEDSNSC
                     FDIHHTFGLGLTNEEQEVRRLVCGPNSIEVEIQPIWKLLVKQVLNPFYVFQAFTLTLW
                     LSQGYIEYSVAIIILTVISIVLSVYDLRQQSVKLHKLVEEHNKVQVTITVRDKGLQEL
                     ESRLLVPGDILILPGKISLPCDAILIDGSCVVNEGMLTGESIPVTKTPLPQTENTMPW
                     KSHSLEDYRKHVLFCGTEVIQVKPSAQGLVRAVVLQTGYNTAKGDLVRSILYPRPLNF
                     KLYNDAFKFMVFLACVGVVGFFYALGVYMYHEVPPRETATMALILLSATVPPVLPAAL
                     TIGNVYAQKRLKKEKIFCISPQRINMCGQINLVCFDKTGTLTEDGLDLWGTVPTAGNC
                     FQAVHSFASGEAVPWGPLCAAMTSCHSLILLDGTIQGDPLDLKMFEGTGWNMEDSQVA
                     SCKFGMADSSTVIKPGPKASQSPVDSITILRQFPFSSGLQRMSVIAQLAGDLHLHVYM
                     KGAPEMVARFCRSETVPKNFSQELRNYTVQGFRVIALAHKTLKMERLSDMDHLAREKV
                     ESELAFLGLLIMENRLKKETRPVLKELSEARIRTVMVTGDNLQTAITVAKNSEMIPVG
                     SQVVIVEANEPGDLVPASVTWQLVGTQEPGSGKKDTYIDIGNSSVPAGKGYHFAMSGK
                     SYQVLFHHFYSMLPQILVNGTIFARMSPGQKSSLVEEFQKLNYYVGMCGDGANDCGAL
                     KMAHAGISLSEQEASVASPFTSKTANIECVPHLIREGRAALVSSFGVFKYLTMYGIIQ
                     FIGTSLLYWQLQLFGNYQYLLQDVAITLMVSLTMSINHAYPKLAPYRPAGQLLSPQLL
                     LSVFMNSCFTCIVQVCTFLTVKQQPWYCEVYKYSECFLVNQSNLSANVSLDRNWTGNA
                     TLVPASVLSFEGTTLWPIVTFNCISAAFIFSKGKPFRKPIYANYLFSLLLASAAGLTI
                     FILFCDFQDLYRKMEFIPTPTSWRVSILIAAFVQFCVAFFVEDAVLQNRELWLFIKKE
                     FGFYSKSQYRILQRKLAEDSTWPPVNRTDYAVNGKNGFYVNRAYESPEEVPKGKLKLE
                     EQASEQHFWTRL"
     exon            259..432
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            433..579
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            580..650
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            651..731
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            732..801
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            802..936
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1009
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1138
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1309
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1467
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1656
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1657..1718
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1719..1869
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1870..1956
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1957..2113
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2114..2231
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2232..2356
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2357..2517
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2518..2634
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2635..2714
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2715..2757
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2758..2867
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2868..2964
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2965..3037
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3038..3212
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3213..3415
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3416..3504
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3505..3585
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3586..4535
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4506..4511
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4524
                     /gene="Atp13a5"
                     /gene_synonym="C630015F21Rik"
                     /note="major polyA site"
ORIGIN      
        1 aaatgaacag accaatactg tggccaaggc gaggctctcc tcagtcttct ttattgttct
       61 aacgggcaag gtgccagcag gttttgtaag cacctgagaa cagcgatgac aagtagtgcc
      121 tgaatcacag aggctcaggt ggctttgaca ttccctcaca cagtggtcag aaagaaccta
      181 cacacgctgc tcttaatgga gaagagcaag aaggatggcc accaggctgt gctcaatgaa
      241 ggggaggaga atgagctgga ggtgtttggc taccataccc agaatttacg gagagcactg
      301 tgccttgtca cagccatcct gactcttggg gcagttcagc tgatgttcta ctggaggcct
      361 gagtggtggg tgtggaccag ttgcatccca tgccccttgc aagaagcaga cacaattttg
      421 ctgaggacaa ccgatgaatt tcgaagatat atgaggaaaa aggtcttctg cctccactta
      481 tccacactga agtttcctat aagcaagaac ccagaggaac ctctggtagc tgaccaccac
      541 tcagtcataa accaagctgt gatgaagcca gaactaaaac tacgatgcat ccaagtgcag
      601 aaaataaggt acgtgtggga tttcttgaag aagcgatttc agaaagttgg gttgctggaa
      661 gacagtaact cctgctttga catccaccat acgtttggat tgggtctgac caatgaagag
      721 caagaggtca gaaggttagt gtgtgggccc aactcgatcg aggtggagat ccaacccata
      781 tggaagctgc ttgttaaaca ggttttaaat ccattctatg tgttccaagc ctttacactc
      841 actctgtggc tgtctcaggg ttacatagaa tactctgtgg ctatcatcat cttgactgtt
      901 atctccattg ttttgagtgt gtatgatttg agacagcaat cagttaagct acacaagctt
      961 gtggaggagc acaacaaagt ccaggtcacg atcacagtaa gagacaaagg tctacaggag
     1021 ctggagtccc gtctcctggt tccaggagat attctcattc ttccagggaa aatttcactg
     1081 ccctgtgatg ctatcttgat cgatgggagt tgtgtggtga atgaaggaat gctcacagga
     1141 gaaagtatac ctgttacaaa gacaccattg ccccaaacgg agaacaccat gccctggaaa
     1201 tcgcacagtt tggaggacta ccggaaacac gtgctcttct gtggaacaga agttattcag
     1261 gtcaagccat ctgctcaggg gcttgttaga gctgttgttc tgcagacagg ttataataca
     1321 gccaaaggag acttagtgag atccatcctc taccctcgac ctctgaactt caaactgtat
     1381 aatgatgcct tcaagttcat ggtgttcctg gcctgcgttg gtgttgtggg atttttctat
     1441 gccctaggtg tctatatgta ccatgaagta cctccgagag aaactgcaac catggccctg
     1501 atccttctca gtgccaccgt ccctcccgtg ctcccggctg cactgaccat aggcaacgtg
     1561 tacgcccaga agaggttgaa gaaggagaag attttctgta tctccccgca gagaatcaac
     1621 atgtgtggtc agatcaacct cgtgtgcttc gacaaaacag gaactctgac agaagatggg
     1681 ctggacctct gggggactgt ccccaccgct ggcaactgtt tccaggcagt ccacagcttt
     1741 gcctcaggtg aggctgtgcc ctggggccca ctgtgtgcag ccatgactag ctgccattct
     1801 ctgatccttc ttgatgggac catccaagga gaccctttgg acctcaaaat gtttgaaggc
     1861 actggttgga atatggaaga tagccaagtg gcctcctgca aatttggcat ggcagattca
     1921 agcacagtaa taaaaccagg accgaaagcc agccagagtc ctgtggacag catcaccatc
     1981 ttgcgccagt ttccattttc ctcaggcctg caaaggatgt ctgtgattgc tcagctggct
     2041 ggtgaccttc acctccacgt ctacatgaag ggagccccag aaatggtggc caggttctgc
     2101 cgctctgaaa cggtgcctaa gaacttctcg caggagctga ggaattacac agtgcaaggc
     2161 ttccgagtca ttgctcttgc ccacaaaacc ctaaagatgg agaggctttc agatatggac
     2221 catctagcaa gggagaaagt ggagtctgag ttggcctttc tgggacttct cataatggag
     2281 aatcgcttga aaaaggaaac aaggccagtg ctgaaggagc tgagtgaggc ccgcatcagg
     2341 accgtgatgg ttacaggtga caatcttcaa actgccatca ctgttgctaa aaattctgaa
     2401 atgattcctg tgggcagcca ggtcgtcatt gtcgaggcta atgagccagg agaccttgtt
     2461 cctgcttctg tgacctggca gctggtgggg acccaagagc caggctctgg gaagaaggac
     2521 acctacattg acatcggaaa cagctctgta cctgctggga aaggttacca ttttgcaatg
     2581 agtgggaagt cataccaagt gttatttcat catttctaca gcatgctgcc acaaattctg
     2641 gttaatggaa ccatttttgc aagaatgtct cctgggcaga agtcaagcct cgtggaagag
     2701 tttcagaaat taaattatta tgtgggcatg tgtggagatg gagccaatga ctgtggggct
     2761 ttgaaaatgg ctcatgctgg catctcacta tcagaacagg aagcatccgt ggcatctccc
     2821 ttcacctcga aaacagccaa tatcgagtgt gtgcctcatc tcatcaggga gggccgggct
     2881 gctctggtct catccttcgg tgtatttaaa tacctgacta tgtacggcat catccagttt
     2941 attggaacat cacttctgta ctggcaacta cagctctttg gtaactacca gtacctcctg
     3001 caagatgtgg ccatcacgct gatggtcagc ttaacaatga gcataaacca tgcctacccg
     3061 aagttggctc cctacagacc agcaggacaa ctactttctc ctcagttgct actctcagtc
     3121 ttcatgaatt cctgttttac ctgcattgtg caagtgtgta catttctcac cgtgaaacag
     3181 cagccttggt actgcgaggt ctacaaatac agtgaatgct ttctggtcaa ccaaagtaac
     3241 ctctcagcca acgtgagttt ggaccgaaac tggactggaa atgcaactct ggttcccgct
     3301 tctgtgctaa gtttcgaggg cactacgttg tggcccatcg tcaccttcaa ctgcatctct
     3361 gcagcattta ttttttctaa gggaaagccg tttcggaaac ccatctacgc aaactattta
     3421 ttctcccttc tgctggcatc tgctgcgggc ctcactattt tcattctgtt ttgtgatttt
     3481 caagacctgt accgtaaaat ggagttcatc ccaaccccca catcatggag agtttcaatt
     3541 ctgatagcag cttttgtcca gttctgcgtt gccttctttg tagaggatgc cgtccttcaa
     3601 aacagagagc tctggctgtt tatcaagaaa gaatttggat tctactccaa aagtcagtat
     3661 aggatcttgc agagaaagct ggcagaggac tctacatggc ctcccgtgaa caggacagat
     3721 tatgcagtca atggcaaaaa tggattctat gtcaacagag cctatgagag ccccgaagag
     3781 gtccccaaag ggaagctcaa gctggaagag caggcttcag aacagcactt ttggactaga
     3841 ctgtaaccag gattgctctc acacctgtcc cgtaacctca ccctttgtcc cccaaactaa
     3901 accttgtggg aaggtggaaa ctgcaaaccc ttctctctct atcaaagcat ccaatcaatg
     3961 cacttcaaca taccgagcct tgcagccaag aacctaacat tcattctatc cttcactagc
     4021 tccagagata actgcacgtc tcagatcacc tttgaaataa cccgtattca tactgtgttg
     4081 ttctaaatgg acagctctca ggcaatgaaa ttagatgtgt ggacatcagg tgagaacaaa
     4141 agctgaggta gcatttggca ttggaaaaaa ttgagtaata tattaattga tgtaagtttc
     4201 cttaatctta cacagtttgt gaagcatatt tatgtacata tgttggccag gatcatgaaa
     4261 tgcctcctgg tttgcatctt ttggtgtggc ttcaataaag aaataagttt gaataattcc
     4321 atcctagcta cacaggaagc cacagtggtg tggaagttga gaacagtaga gactggtgct
     4381 aatcttttat aatcatggca tgagcattgt taaaatgtaa gtaaactaca ccaagtttgt
     4441 acgttccaaa agtatactgt atggggccag agaacctaac agtgcagagt agactacaat
     4501 agtaaaataa actgttcaaa tgtatttttc actgt
//
