LOCUS       NM_029570               4958 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus ATPase, class VI, type 11B (Atp11b), transcript
            variant 1, mRNA.
ACCESSION   NM_029570 XM_358349
VERSION     NM_029570.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4958)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4958)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   3  (bases 1 to 4958)
  AUTHORS   Tang,F., Barbacioru,C., Nordman,E., Bao,S., Lee,C., Wang,X.,
            Tuch,B.B., Heard,E., Lao,K. and Surani,M.A.
  TITLE     Deterministic and stochastic allele specific gene expression in
            single mouse blastomeres
  JOURNAL   PLoS One 6 (6), e21208 (2011)
   PUBMED   21731673
REFERENCE   4  (bases 1 to 4958)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   5  (bases 1 to 4958)
  AUTHORS   Halleck,M.S., Schlegel,R.A. and Williamson,P.L.
  TITLE     Reanalysis of ATP11B, a type IV P-type ATPase
  JOURNAL   J Biol Chem 277 (12), 9736-9740 (2002)
   PUBMED   11790799
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ128477.1, CN535194.1, BC076603.1 and CF952078.1.
            
            On Oct 21, 2017 this sequence version replaced NM_029570.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC076603.1, AK129248.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                CJ128477.1         2-76
            76-205              CN535194.1         1-130
            206-3593            BC076603.1         1-3388
            3594-4079           CF952078.1         133-618
            4080-4268           BC076603.1         3875-4063
            4269-4958           BC076603.1         4065-4754
FEATURES             Location/Qualifiers
     source          1..4958
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 17.36 cM"
     gene            1..4958
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /note="ATPase, class VI, type 11B"
                     /db_xref="GeneID:76295"
                     /db_xref="MGI:MGI:1923545"
     exon            1..348
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     CDS             322..3849
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /EC_number="7.6.2.1"
                     /note="probable phospholipid-transporting ATPase IF;
                     P4-ATPase flippase complex alpha subunit ATP11B"
                     /codon_start=1
                     /product="phospholipid-transporting ATPase IF"
                     /protein_id="NP_083846.2"
                     /db_xref="CCDS:CCDS38414.1"
                     /db_xref="GeneID:76295"
                     /db_xref="MGI:MGI:1923545"
                     /translation="MWRWVRQQLGFDPPHQSDTRTIYIANRFPQNGLYTPQKFIDNRI
                     ISSKYTIWNFVPKNLFEQFRRVANFYFLIIFLVQLMIDTPTSPITSGLPLFFVITVTA
                     IKQGYEDWLRHNSDNEVNGAPVYVVRSGGLVKTRSKNIRVGDIVRIAKDEIFPADLVL
                     LSSDRLDGSCHVTTASLDGETNLKTHVSVPETAVLQTVANLDSLIAVIECQQPEADLY
                     RFMGRMIITQQMEEIVRPLGPESLLLRGARLKNTKEIFGVAVYTGMETKMALNYKSKS
                     QKRSAVEKSMNTFLIIYLIILISEAIISTILKYTWQAEEKWDEPWYNQKTEHQRNSSK
                     ILRFISDFLAFLVLYNFIIPISLYVTVEMQKFLGSFFIGWDLDLYHEESDQKAQVNTS
                     DLNEELGQVEYVFTDKTGTLTENEMQFRECSINGLKYQEINGKLVPEGPSPDSTEGEV
                     PFLGSLSHLSNSAHLTATSLRTSPESETELIKEHDLFFKAVSLCHTVQISNVQTDGIG
                     DGPWQPNLAPAQLEYYASSPDEKALVEAAARAGIIFVGISEETMEVKVLGRLERYKLL
                     HILEFDSDRRRMSVIVQAPSGEKLLFAKGAESSILPKCIGGEIAKTRIHVDEFALKGL
                     RTLCIAYRQFTAKEYEDVDRRLFEARTALQHREEKLADAFQYIEKDLILLGATAVEDR
                     LQDKVRETIEALRMAGIKVWVLTGDKHETAVSVSLSCGHFHRTMNILELINQKSDSGC
                     AEQLRQLARRITEDHVIQHGLVVDGTSLSLALREHEKLFMEVCRNCSAVLCCRMAPLQ
                     KAKVIRLIKISPEKPITLAVGDGANDVSMIQEAHVGIGIMGKEGRQAARNSDYAIARF
                     KFLSKLLFVHGHFYYIRIATLVQYFFYKNVCFITPQFLYQFYCLFSQQTLYDSVYLTL
                     YNICFTSLPVLIYSLVEQHIDPHVLQSKPTLYRDISKNGLLSIKAFLYWTVLGFSHAF
                     IFFFGSYFLVGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFWTWINHLV
                     TWGSIIFYFIFSLFYGGILWPFLGSQNMYFVFIQLLSSGSAWFAILLMVVTCLFIDVV
                     KKVFDRQLHPTSTEKAQLAEAHSSVKCLDSVCCFPGETPCASVGRMLERVIGRCSPNH
                     ISRLWNASDPFYTNDRSILTLSPMDSSTC"
     exon            349..465
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            466..555
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            556..636
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            637..744
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            745..873
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            874..977
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1025
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1090
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1172
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1173..1323
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1521
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1761
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1762..1937
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            1938..2006
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2007..2080
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2081..2184
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2185..2366
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2367..2570
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2571..2724
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2725..2827
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2828..2973
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            2974..3033
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3034..3161
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3162..3300
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3301..3366
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3367..3470
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3471..3636
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3637..3767
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     exon            3768..4939
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4918..4923
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /note="hexamer: AATAAA"
     polyA_site      4939
                     /gene="Atp11b"
                     /gene_synonym="1110019I14Rik; ATPIF; ATPIR; mKIAA0956"
                     /note="major polyA site"
ORIGIN      
        1 gggcccatgg cgggcgaggg cggggcggcg ccgtgggggc ggcggtgctt cgggtgacaa
       61 cggtcagaga tgaaggtggc ggcggctcag cggggagtag tgctgcgccg ggcgcggttg
      121 gcagccaggc cgcgcctgta ggacctccgg gccggggtgg cgggatgggg acccgactcg
      181 ggtagaaaag cggggacagc agagagcaga acttaagccc gaggggctcg cctgctccgg
      241 tcacactcgg agtcctcttc cacctgctgc cgctcggtcc cgcgtccggc gggccacgac
      301 ggcgtcggcg acggcggggg catgtggcgc tgggtccggc agcagctggg ttttgaccca
      361 ccacatcaaa gtgacacaag aactatttac atagccaaca ggtttcctca gaatggcctt
      421 tacacacctc agaaatttat agataaccgg atcatttcat ctaagtatac tatatggaat
      481 tttgttccaa aaaatttatt tgaacagttc agaagagtgg caaactttta ttttcttatt
      541 atatttttgg ttcagcttat gattgataca cctaccagtc caattaccag tggacttcca
      601 ttattctttg tgataacagt aactgccata aaacagggtt atgaagactg gttacgccat
      661 aactcagata atgaagtaaa cggagctcct gtctatgttg tcagaagtgg ggggcttgta
      721 aaaactcgat ccaaaaacat tcgggtgggt gatattgttc gtatagccaa agatgaaatt
      781 tttcctgcag atttggtgct tctgtcctca gatcgacttg atggttcatg tcatgtgaca
      841 actgctagtt tggatggaga gacaaaccta aagacacatg tgtcagttcc agaaacagca
      901 gtattacaaa cagttgccaa cttggacagt ctcatagctg taatagaatg ccaacagcca
      961 gaagcagatt tatacagatt tatgggacga atgataataa ctcaacaaat ggaagaaatt
     1021 gtaagacctc tgggaccaga gagtctcttg cttcgtggag ccagattaaa aaatacaaaa
     1081 gaaatttttg gtgtggctgt atacactgga atggaaacta agatggcact aaattacaag
     1141 agcaagtcac agaaaagatc tgcagtagaa aaatcaatga acacattttt aataatttac
     1201 ctaataatac ttatttctga ggccatcatc agtacgatct tgaaatatac ctggcaagct
     1261 gaagaaaaat gggatgaacc ttggtataac caaaaaacag aacatcaaag aaacagtagt
     1321 aagattctga gatttatttc tgacttcctt gcttttttgg tactctacaa tttcatcatt
     1381 ccaatttctc tgtatgtgac agttgagatg cagaaatttc ttggatcatt ttttattggc
     1441 tgggatcttg atctgtatca cgaagagtca gatcagaaag ctcaagtcaa tacttctgat
     1501 ctgaatgaag agcttgggca ggtggaatat gtatttacag ataaaactgg aacactgaca
     1561 gaaaatgaga tgcagtttcg agaatgttca attaatggcc tgaaatacca agaaatcaat
     1621 ggtaaacttg tacctgaagg accaagccca gactccacag aaggagaagt gcctttcctt
     1681 ggtagtttat cccatctcag caactcagcc catctcacag ccacttctct tagaaccagt
     1741 cctgaaagtg aaactgagct aatcaaagaa cacgatctgt tctttaaagc agtcagtctt
     1801 tgccatactg tacagatcag caatgttcaa actgacggca tcggggatgg tccctggcag
     1861 cccaacctgg cacctgcaca gctggagtac tatgcatctt caccagatga aaaggctctg
     1921 gtggaagctg cggcaagagc tggtattata tttgtaggca tttctgaaga aactatggag
     1981 gttaaagtac ttgggagatt ggaaaggtac aaattgcttc atattctgga atttgattca
     2041 gatcgtagga gaatgagtgt aattgttcag gcaccttcag gtgagaagct tttatttgct
     2101 aaaggagcag aatcttcaat tctccctaaa tgtataggtg gagaaatagc aaaaaccaga
     2161 attcatgttg atgagtttgc tttgaaagga ctgcggacac tgtgtatagc ttacagacag
     2221 tttacagcta aagagtatga agatgtagac aggcgcctgt ttgaggccag aactgccttg
     2281 cagcatcggg aagagaaatt ggctgatgcc ttccagtaca ttgagaaaga cctgatattg
     2341 ctaggagcta cagcagtgga agacagacta caagataaag ttcgagaaac tattgaagca
     2401 ctgagaatgg ctggtattaa agtatgggta cttactggag acaaacatga aacagctgtt
     2461 agtgtgagtt tatcttgtgg acattttcat agaactatga atatcctgga acttatcaac
     2521 cagaagtcag atagtggatg tgctgaacag ttgaggcagc ttgccagaag aattacagag
     2581 gaccatgtga ttcagcatgg gctagtagta gatgggacca gcttatctct tgcactcagg
     2641 gaacatgaaa agctctttat ggaagtttgc agaaactgtt cagctgtatt atgttgtcgc
     2701 atggcacctt tacagaaagc aaaagtaata agactgataa aaatctctcc tgagaaaccg
     2761 ataacactgg ctgttggtga tggtgctaat gatgtaagca tgatacaaga agcgcatgtt
     2821 ggcataggaa tcatgggtaa agagggaaga caagctgcaa gaaacagtga ctatgcaata
     2881 gctagattta aatttctctc caaattactt tttgttcacg gtcattttta ttatattaga
     2941 atagctaccc ttgtacagta ttttttttat aagaatgtgt gctttatcac accccagttt
     3001 ttatatcagt tctactgttt gttttctcaa caaacactgt atgacagcgt gtacctgact
     3061 ttatacaata tctgttttac ttccctacct gttctcatat atagtcttgt ggaacaacat
     3121 atagacccac acgtattaca gagcaagcct accctctatc gggacattag taaaaacggt
     3181 ctcttgagca ttaaagcatt tctttactgg accgtcctgg gtttcagcca tgccttcatt
     3241 ttcttctttg gatcctactt tctagtgggg aaggatacat ctttgcttgg aaatggtcag
     3301 atgtttggaa actggacatt tggtactttg gtcttcacag tcatggttat tacagtcaca
     3361 gtaaagatgg cattggaaac tcatttctgg acttggatca accatcttgt tacctgggga
     3421 tctattatat tttattttat attttctttg ttttatggtg gaattctctg gccatttttg
     3481 ggctcccaga atatgtactt tgtatttatt cagctcctgt caagtgggtc agcttggttt
     3541 gccatactcc tcatggttgt tacatgtcta ttcattgatg ttgtgaagaa agtgtttgat
     3601 cgacagcttc atcctacaag tacagaaaag gcacagcttg ctgaagctca ttccagtgtc
     3661 aagtgcttgg actccgtgtg ctgtttccca ggagagaccc cgtgtgcgtc tgttggaaga
     3721 atgctggagc gagtcatagg acggtgtagt cccaaccata tcagcaggtt gtggaatgca
     3781 tcggatccat tctataccaa tgacaggagc atcttgactc tctcgccaat ggactcatct
     3841 acttgttaaa gggacagtag gactttgtgg aacaagttca cttgtcctca ggtttggggt
     3901 caccatccag ttgtaaaagg ccagttactt tctgaaatct cttgaggaat tgacactttc
     3961 tcagagtcca tgggaaacag gcagttatat gaacccttct cctttctctt taatttgaat
     4021 gtgaatatat taaaatttgg agataaagag atagtaacaa tctctttgtc tggtttgtcc
     4081 cttctgatca tgggactcct ggtggcattg cagcctttgc tgaggccact gtactttaat
     4141 atcaaggtag agaaaggggt cattcttggt tatgtgtagt ttaagatgag ggtggtttgg
     4201 gactcttcta tttaaatctg cttctgtaaa ttttgctaaa gatttgcctt gagaactcta
     4261 ttttttttat tagattatat ttgaagcttt tcgtggggaa agttaatgtg aatatcaagg
     4321 aattttggtc cttcagtgac ctctgttaat tcattagtac tttttaagtc acagagcaac
     4381 taggagagca cgtttctaac cactgtcttt tgcggtgtgg gtaataagct tatactgacc
     4441 ccacttcttt aacgatgctg taacccagcc agtgacgcta atcctacaag tgcaaaggga
     4501 gttttgcatc tcatgtccaa gtcagaatta gggccattta ctagacttca aattggtgtt
     4561 tgctaatatt tttgtggcca agtatgtaaa cttgtagtgg gtaaattcaa tacttttgtc
     4621 atattaattt actgtatctg tcttatcttt tgcatgcttc aacctggcta atatatttaa
     4681 atccaccgca tctctcctcc ctccccccat tattactttc ctctctctcc aaagactctg
     4741 ttcatagttt tataacaata ttgtaaagtt caattgtatc aataaaaaaa aaaaacaagt
     4801 ttggacagta tttaaatatt gcaaatatat ttaattatat aaattaaaat ataagccata
     4861 atgtctttct ttggcccact tagaattgct cttgacttgc tgtaaaccaa ccttcagaat
     4921 aaaggacttt tgttaagaaa aaaaaaaaaa aaaaaaaa
//
