LOCUS       NM_001113283            4355 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus atos homolog A (Atosa), transcript variant 1, mRNA.
ACCESSION   NM_001113283
VERSION     NM_001113283.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4355)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4355)
  AUTHORS   Soulez,M., Saba-El-Leil,M.K., Turgeon,B., Mathien,S., Coulombe,P.,
            Klinger,S., Rousseau,J., Levesque,K. and Meloche,S.
  TITLE     Reevaluation of the Role of Extracellular Signal-Regulated Kinase 3
            in Perinatal Survival and Postnatal Growth Using New Genetically
            Engineered Mouse Models
  JOURNAL   Mol Cell Biol 39 (6), e00527-18 (2019)
   PUBMED   30642949
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4355)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT025657.12 and CT033761.14.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.238097.1,
                                           SRR1660811.16631.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-226               CT025657.12        132284-132509
            227-343             CT025657.12        132945-133061
            344-528             CT025657.12        183496-183680
            529-731             CT025657.12        185519-185721
            732-857             CT025657.12        186193-186318
            858-2673            CT025657.12        187882-189697
            2674-2787           CT025657.12        192172-192285
            2788-2867           CT025657.12        195075-195154
            2868-2976           CT025657.12        196269-196377
            2977-3135           CT025657.12        198228-198386
            3136-3204           CT033761.14        14750-14818
            3205-3401           CT033761.14        16816-17012
            3402-4355           CT033761.14        22680-23633
FEATURES             Location/Qualifiers
     source          1..4355
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 42.12 cM"
     gene            1..4355
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /note="atos homolog A"
                     /db_xref="GeneID:235493"
                     /db_xref="MGI:MGI:2387648"
     exon            1..226
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            227..343
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     CDS             328..3555
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein FAM214A; family with sequence similarity 214,
                     member A; atos homolog protein A"
                     /codon_start=1
                     /product="atos homolog protein A isoform 1"
                     /protein_id="NP_001106754.1"
                     /db_xref="CCDS:CCDS52857.1"
                     /db_xref="GeneID:235493"
                     /db_xref="MGI:MGI:2387648"
                     /translation="MKPDRDALDEYFEYDAEEFLVSLALLITEGRTPECSVKGRAESF
                     HCPPAQSRFPGTARHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEVMLLPDCCYSD
                     EGPSTEGADLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKALLLAVRSFVFFSQLS
                     AWLSVSHGAIPRNILYRISAADVDLQWSFSQTPTEHVFPVPNVSHNVALKVSVQSLPR
                     QAHYPVLTCSIHTNIGLYEKRIQEQELRACQHHGPGEVEYRCPSSSQSLCSKHTWTMA
                     PVSALHVRSGMPPEYTAAIRNVRLCPGTGSKSDQGAPQASVLGFSGTGGEVRSQEASV
                     RTFKSLPVVDSSVSSCQSSRQPVGEPNPLMDSLIQDRQEVIARIAQHLIHCDPSSSRM
                     SELPFNTQESTSLSPKLHPVSQESGCVRRYKEAFSVSFGSPEFGSPGDSREGKVREKS
                     ETRPGETCTSHSLYPRQPAGEANPLIGSLLQERQDVIARIAQHLEHIDPAAHIPRPAF
                     SKHDSNSIPSKVFRSSFDDKTLLKKGRENVSVSVSHTEVSLLGDRGDGESLKPSKCLR
                     SFKYSPQEKPLKPEVRTQHQNHPDSITPTARQELLNKAAGLLTSSNTALCKESSLGLV
                     SRLESTSCKLQLKEQEMSHETEKQCLHCNSIDKQICTNTCTEKINDEHSPGSLRHLQC
                     DDSKGIDSKLKVTLLEMPDSLNKNKTNCSSKDSKRSKTCEQSIRVGTENDLSEENEGP
                     GSTVSDRLKTEQEAKRDSGAGKPHSVKHCLSAGERLHSADMLRTTLKHSSVWRKHNFH
                     SLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDASLLHLRSLSSKSSRPCLNIDE
                     DPDVHEKPFLSSSAPPITSLSLLGNFEESVLNYRLDPLGIVDGFTAEVGASGTFCPTH
                     LTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMF
                     VVVYDLRGMPANHQTFLRQRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSK
                     SGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC"
     exon            344..528
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            529..731
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            732..857
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            858..2673
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            2674..2787
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            2788..2867
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            2868..2976
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            2977..3135
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            3136..3204
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            3205..3401
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     exon            3402..4355
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3952..3957
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /note="hexamer: AATATA"
     polyA_site      3972
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /note="major polyA site"
     regulatory      4331..4336
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
                     /note="hexamer: AATATA"
     polyA_site      4351
                     /gene="Atosa"
                     /gene_synonym="6330415I01Rik; C130047D21Rik; Fam214a;
                     Kiaa1370; mKIAA1370"
ORIGIN      
        1 gtgtgatgtg agcggccggg cggccgcaga gagcagtgcc gggaggagga gcgaggggtc
       61 ccggagggcg gcgagcgggc gggccatggg agccgttccc gggtgggttg agccacgcgt
      121 gggtcggcgc ggctgaggac atgcccagac tctgctgctg accggctccg gctggaaccc
      181 ggctactgaa gcctcggagg ggctagccag aggggatccc ccgcagcgtt tggaaaacga
      241 agcagaagcc gttgagtcag ccgtgtgccg gttggaagaa cccacacctg tgttttacag
      301 cactttgggt ggaaattgga tgccaaaatg aagccagacc gagatgcctt ggatgagtat
      361 tttgaatatg acgcagagga gttcttggtc tctttggcct tgctgataac tgaaggacga
      421 accccggagt gctctgtgaa aggccgtgca gagagtttcc actgccctcc agcgcagtct
      481 cgcttcccag gaacggccag acatgaatgc agcgacaagc tggcccagtg tcgccaagcc
      541 agacgaacca gatctgaggt cacactgttg tggaaaaata atctcccaat catggtggag
      601 gtgatgctcc tgccggattg ctgctacagt gacgaggggc ctagtacaga gggggcagat
      661 ctgaatgatc ccgccattaa gcaagacgca ctgttactgg agaggtggat cttggagcca
      721 gttccccgac agaatggtga ccgcttcatc gaagagaagg cacttctgct ggctgtcaga
      781 tcatttgtgt ttttttctca gttaagtgct tggctgagtg tttctcatgg tgctattcca
      841 cgaaacattc tttacagaat cagtgctgcg gatgtcgacc tgcagtggag tttttcacag
      901 actccaactg agcatgtgtt tcccgtcccc aatgtctctc acaatgtggc cttgaaagtc
      961 agcgttcagt ccttacccag acaagctcat tatccggttt tgacctgtag tattcatact
     1021 aacattggtc tgtatgagaa gagaattcaa gaacaggagc ttagagcctg tcagcaccat
     1081 ggccctggtg aggtggagta ccgttgtccc agcagctcac agagcctatg cagcaagcac
     1141 acatggacca tggcacccgt gagtgccctg cacgtcagaa gtggcatgcc tcccgagtac
     1201 actgcagcca ttagaaatgt caggctctgc ccaggcacag gcagcaagtc tgaccagggg
     1261 gcacctcaag ccagtgtcct gggcttcagt ggcactgggg gagaagtgag gtcacaggag
     1321 gcgtcagtga gaacgttcaa atcactgcct gtggtcgatt ccagtgtctc cagctgtcag
     1381 agctctcggc agccagtagg ggaacctaac cctttaatgg actccttgat tcaggatcga
     1441 caagaagtca ttgccaggat tgctcagcac ttgattcact gtgaccccag ctcctctaga
     1501 atgtctgaac tcccctttaa cacccaggag tccacgtcac ttagcccaaa gcttcaccca
     1561 gtttcacagg aaagtgggtg tgtgaggaga tataaagaag cattctctgt ctcctttggg
     1621 agtccagagt ttggctcccc aggagacagc agggagggga aagtcagaga gaagtcagaa
     1681 accaggccag gagaaacttg cacttctcac agtctgtacc ctcgccagcc tgctggggag
     1741 gcgaacccac tgattggctc tttactccag gagcggcagg acgtcatagc caggattgca
     1801 cagcacctag aacacatcga ccccgcagct cacattcccc ggcctgcatt cagcaagcac
     1861 gactccaatt ccattccttc taaagtgttc aggagttcat ttgatgacaa aaccttgttg
     1921 aagaagggca gagagaatgt ctctgtctct gtgtctcata cagaagtgtc cttattggga
     1981 gacagaggtg atggggaaag cctcaaacct agtaaatgct tgcgatcttt caaatacagc
     2041 cctcaagaaa agcctttgaa acctgaagta agaactcagc atcagaacca tcctgatagc
     2101 atcaccccca cagccaggca ggagctgctg aacaaggctg ctggcttact aacttcctct
     2161 aacacagctc tctgcaaaga aagcagcttg ggtttggtta gcagattgga aagtacatct
     2221 tgtaaattac aacttaagga gcaagaaatg agccatgaaa ctgagaaaca gtgtttgcat
     2281 tgcaacagta ttgacaaaca gatttgcaca aatacatgta cggagaaaat caacgacgag
     2341 catagtccag gatctctccg tcatctccag tgtgatgatt caaaaggtat tgactcaaaa
     2401 ctaaaagtga ctctgctgga aatgcctgac agtttgaaca agaacaaaac taattgttca
     2461 agtaaagact ccaaaagatc caagacgtgt gagcaaagca ttcgggttgg cacagaaaat
     2521 gacctcagtg aagagaatga gggtcccgga agcactgtat cagaccgact caaaactgag
     2581 caggaggcaa aaagggactc aggtgctgga aaacctcaca gcgtaaagca ctgtttgtct
     2641 gcaggcgaga ggctgcacag cgcagacatg ttgaggacta cactgaaaca ttcaagtgtc
     2701 tggaggaaac ataattttca ttccttggat gggacatcaa ccagagcctt tcatcctcag
     2761 acggggctgc ctctcctctc aagtccagtt cctcaaagaa aaacacagtc aggctgcttt
     2821 gatctagacg cgtcgctgct gcatctgaga agcctatcct ccaaaagctc tcggccatgc
     2881 ctgaatattg acgaggaccc agatgttcat gaaaaacctt ttttgagttc aagtgctcca
     2941 ccaatcacaa gtcttagtct cctaggaaat tttgaggaat cggttctgaa ctaccgttta
     3001 gaccccctcg gcatagtcga tggctttacg gccgaggtgg gagccagtgg gactttctgc
     3061 ccaacgcact tgactctgcc agtggaagtg tcgttctaca gtgtttccga tgataatgct
     3121 ccctcgcctt acatgggtgt gattacttta gagtcccttg gtaaaagggg ttatcgagta
     3181 cctccttcag gaacgataca agtgacctta ttcaatccca ataagactgt ggtgaagatg
     3241 tttgtagtcg tgtatgacct acgaggtatg ccagccaatc accagacatt cctgagacag
     3301 aggacgttct cagttcctgt taaacaagag atgaagagaa gtattaacaa agagaacgtc
     3361 cagcacacgg cacagttact acgctacctc atacacctga ggttccagag ttctaaatct
     3421 ggaaagatct acctccatag agatgtccgg ctcctgttct ctagaaagtc catggaggtc
     3481 gatagcggtg ctgcgtatga actcaaatcc tacactgagt cgccaacaaa ccctcagttt
     3541 tcaccaagat gttgatgagg gggacaactt aaaagtattt gctcagtacc caagcctgaa
     3601 catgagcatt cacagaatgg aatacatcga acgagagcca gcggagcaga gtggccctcc
     3661 tctgttgtcc tggaccagat tttattaaag gacccctgaa gtgagacccg tgattcctaa
     3721 gtggactgga agcacccgtg tcgtcgccct ttttgtactg ttgaaaccac ttcattggac
     3781 agttgcaata gcaaaatccc cagttagatt agtgtttaca cattttattt ctgttattta
     3841 atatttaatg ttttccttta tagtcaagtg atgtttgtct ctagtgttct aatgtagcac
     3901 aatcctatgt aaaatcatac tatgtatttt tgacattatt gttgaaattg aaatatatgc
     3961 ataagtcttt aattttgtgt ggtgtgtttt aagtgctatt catttaagct actgaaaatg
     4021 aaaatgaaat gttgggcttc tttaagatta atgcactatg caagcatgta tgctttttat
     4081 atctctccag gttaggtttt atagcactcg cccagggtct gtccccaggg ggtccgacaa
     4141 agctgctccc atcctcctgg caagcgctga gctacctgcc cattctcatt ccttctaagg
     4201 tccaaaacat tctattttcc ctgaatcact actgtagagg ttttacttta aattgctgtc
     4261 ccatgctaga taattttctc acactgttaa aaagaatatg tactttgaaa agattaatat
     4321 ttatattgta aatatatgca aaaaactaaa atgtg
//
