LOCUS       XM_017313783             887 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus autophagy related 5 (Atg5), transcript
            variant X2, mRNA.
ACCESSION   XM_017313783
VERSION     XM_017313783.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017313783.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..887
                     /gene="Atg5"
                     /gene_synonym="2010107M05Rik; 3110067M24Rik; Apg5l; Atg5l;
                     Paddy"
                     /note="autophagy related 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 201 long SRA reads, 2 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 56 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:11793"
                     /db_xref="MGI:MGI:1277186"
     CDS             315..887
                     /gene="Atg5"
                     /gene_synonym="2010107M05Rik; 3110067M24Rik; Apg5l; Atg5l;
                     Paddy"
                     /codon_start=1
                     /product="autophagy protein 5 isoform X2"
                     /protein_id="XP_017169272.1"
                     /db_xref="GeneID:11793"
                     /db_xref="MGI:MGI:1277186"
                     /translation="MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSY
                     LTLVTDKVKKHFQKVMRQEDVSEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITV
                     HFKSFPEKDLLHCPSKDAVEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND
                     LTSFGPSTGNSWNILQKKMDFVISPLEYIR"
ORIGIN      
        1 tggtcttggt gacgtcatct ccgggcgccg agggtgactg gacctacggt gggcgcccgg
       61 cgctgcggtt cactctggtt ccgagggcgg aagtgcccgt cgggctgttt tctgacccgg
      121 gcggcagcac tgtgcggctg cgcgcgcact gggacttctg ctcctgcgcc tctgcaggac
      181 agtgtgatcc cggcagacag aacccgaccg agcggctttc gcgctgcggg aagccggagc
      241 agagccggca cctcggtttg gctttggttg aaggaagaac ttagcctata tgtactgctt
      301 catccactgg aagaatgaca gatgacaaag atgtgcttcg agatgtgtgg tttggacgaa
      361 ttccaacttg ctttactctc tatcaggatg agataactga aagagaagca gaaccatact
      421 atttgctttt gccaagagtc agctatttga cgttggtaac tgacaaagtg aaaaagcact
      481 ttcagaaggt tatgagacaa gaagatgtta gtgagatatg gtttgaatat gaaggcacac
      541 ccctgaaatg gcattatcca attggtttac tatttgatct tcttgcatca agttcagctc
      601 ttccttggaa catcacagta catttcaaga gttttccaga aaaggacctt ctacactgtc
      661 catccaagga tgcggttgag gctcacttta tgtcgtgtat gaaagaagct gatgctttaa
      721 agcataaaag tcaagtgatc aacgaaatgc agaaaaaaga ccacaagcag ctctggatgg
      781 gactgcagaa tgatttgacc agttttgggc catcaaccgg aaactcatgg aatatcctcc
      841 agaagaaaat ggatttcgtt atatcccctt tagaatatat caggtag
//
