LOCUS       NM_153123               2584 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus activating transcription factor 7 interacting protein
            2 (Atf7ip2), transcript variant 1, mRNA.
ACCESSION   NM_153123 XM_148109 XM_489510
VERSION     NM_153123.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Shao,Q., Zhang,Y., Liu,Y., Shang,Y., Li,S., Liu,L., Wang,G.,
            Zhou,X., Wang,P., Gao,J., Zhou,J., Zhang,L. and Wang,S.
  TITLE     ATF7IP2, a meiosis-specific partner of SETDB1, is required for
            proper chromosome remodeling and crossover formation during
            spermatogenesis
  JOURNAL   Cell Rep 42 (8), 112953 (2023)
   PUBMED   37542719
  REMARK    GeneRIF: ATF7IP2, a meiosis-specific partner of SETDB1, is required
            for proper chromosome remodeling and crossover formation during
            spermatogenesis.
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Olesen,C., Nyeng,P., Kalisz,M., Jensen,T.H., Moller,M., Tommerup,N.
            and Byskov,A.G.
  TITLE     Global gene expression analysis in fetal mouse ovaries with and
            without meiosis and comparison of selected genes with meiosis in
            the testis
  JOURNAL   Cell Tissue Res 328 (1), 207-221 (2007)
   PUBMED   17431699
REFERENCE   3  (bases 1 to 2584)
  AUTHORS   Cai,H., Hu,J., Song,P. and Gong,W.
  TITLE     PSM2, a novel protein similar to MCAF2, is involved in the mouse
            embryonic and adult male gonad development
  JOURNAL   Mol Biol Rep 33 (3), 159-166 (2006)
   PUBMED   16850184
  REMARK    GeneRIF: cloning and characterization of PSM2; deduced protein has
            high similarity with human MCAF2; hypothesized that PSM2 might
            interact with some important partners by the conserved domain and
            be involved in the transcription modulation during gonad
            development
REFERENCE   4  (bases 1 to 2584)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY715784.1, AK145634.1 and AC154311.2.
            
            On or before Mar 28, 2009 this sequence version replaced
            XM_489510.3, XM_148109.5, NM_153123.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and it encodes the longer protein (isoform 1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145634.1, SRR15390195.268598.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-42                BY715784.1         3-44
            43-2178             AK145634.1         2-2137
            2179-2187           AC154311.2         161462-161470       c
            2188-2584           AK145634.1         2146-2542
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 5.5 cM"
     gene            1..2584
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /note="activating transcription factor 7 interacting
                     protein 2"
                     /db_xref="GeneID:75329"
                     /db_xref="MGI:MGI:1922579"
     exon            1..120
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            121..275
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..1489
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein similar to MCAF2; MBD1-containing
                     chromatin-associated factor 2"
                     /codon_start=1
                     /product="activating transcription factor 7-interacting
                     protein 2 isoform 1"
                     /protein_id="NP_694763.2"
                     /db_xref="CCDS:CCDS49758.1"
                     /db_xref="GeneID:75329"
                     /db_xref="MGI:MGI:1922579"
                     /translation="MESPDRKRQKVLKAKKTMPTSYQKQLEILNKSTNVEAPKTTVGT
                     NIPNGHNQKMFSKNKENVKVMKVSEQINENACGALERHTALLEQVKHWIRQEICMINC
                     NLFDKKLNELNERIGKTQCKSRHEAIAGELFVKIRRLQKRIKTVLSSQRNCLEPNTLP
                     SNTVCKVTDSEAMNLNVTQKSVKSRSKRISSVNHTPLNSSEKAGRKTNLPSTCVEFAS
                     ESNTDDVMLISVKNSNLTTSITSEQTEIRKNTSRNLSNSPNSMIKVGPVEKKFDFVID
                     LTREGPSNYSIESPSFTLKSTSKAVLRSKEIIPVAENGNEGFGSFEHLPPLPEPPAPL
                     PEMADKIKDTLPPQKPELKVKWVLRPTSIALTWNIPKVNPNCAPVESYHLFLYYENSD
                     HLTWKKIAEIKALPLPMACTLSQNLASTKYYFAVQSKDIFGRYGPFCNIKSIPRFSEN
                     LT"
     exon            276..394
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            395..529
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            530..628
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            629..789
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            790..863
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            864..925
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            926..992
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1078
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..2584
                     /gene="Atf7ip2"
                     /gene_synonym="4930558K11Rik; Get-1; PSM2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagggaggg agatttagtc tagctccagc ccaaccgcgg gtcattttgt ctggggtctc
       61 ggctctggct gaggccggcg gaagacggct gaggacggct gaggagcgac gccgctccag
      121 gatatgaaat atggaaagtc cagacagaaa aagacagaag gttttaaagg ccaagaaaac
      181 aatgcctaca agttaccaga agcagttgga gatcctgaac aagtcaacga atgttgaagc
      241 tccaaaaaca acagttggaa ctaatattcc aaatggtcat aatcagaaga tgttttcaaa
      301 aaacaaagaa aatgttaagg tcatgaaagt ttcagagcaa attaatgaaa atgcttgtgg
      361 ggctctggaa agacatacag cactgctaga acaggttaaa cattggattc gacaggagat
      421 ttgcatgata aactgtaatt tatttgataa aaaactgaat gaattgaatg aacgcattgg
      481 gaagacccag tgcaagagta gacatgaagc aatagctggt gaactctttg taaaaataag
      541 aagacttcaa aaacgcatca aaacagtatt atcatctcaa agaaattgtt tggaaccaaa
      601 cacattaccc agtaatacag tctgtaaggt tacagattca gaggctatga atttgaatgt
      661 gacccaaaag tcagttaaaa gtcgaagtaa aagaatatct tctgtgaacc ataccccttt
      721 aaactcttca gaaaaagcag gtagaaagac taatttgcca tcaacttgtg ttgagtttgc
      781 ttctgaaagt aacactgatg acgttatgtt gatttctgtg aaaaattcta atttgacaac
      841 ttcaattaca tcagagcaaa cagaaattag aaaaaataca tcaagaaatt tgagcaactc
      901 acctaatagc atgattaaag ttgggcccgt agagaagaaa tttgattttg ttattgactt
      961 gacaagagaa ggcccgtcca actacagcat agaaagccca tctttcaccc tgaagtcaac
     1021 ttcgaaagct gttttaagat caaaagaaat aattccagtg gcagaaaatg gaaatgaggg
     1081 ttttggttca tttgaacacc ttccacctct cccagagcca ccagcaccac tccctgagat
     1141 ggcagacaaa atcaaagata cacttcctcc ccaaaagcct gagctgaaag tgaagtgggt
     1201 gctgaggccc acaagcattg ccctgacatg gaacatcccc aaggtcaacc ccaactgtgc
     1261 gcctgtggag agttaccacc tcttcctgta ctatgagaac tctgatcact tgacgtggaa
     1321 gaaaattgca gaaattaaag ctttaccact tcccatggct tgcaccttat ctcagaattt
     1381 agcttctacc aagtattatt ttgctgtcca gtcaaaagac atttttggga gatatggacc
     1441 attttgtaat atcaaatcta ttcctaggtt ttctgaaaac cttacctaaa agtcctcagt
     1501 aattttatgt tttatacatg tcatgttttc atatttgaat gttttgttta cagtgtttct
     1561 ctaacactgt gccttgtact atcccatgtt gcagtttgtg aaccctttgt ttggggacag
     1621 tcttacatgt attgtactcg ttttggaatt ttctgtgttt ctaatttgca ttcagtatat
     1681 acttctgtta cctttagttt tatatatacc ctaccatgga cccatgttgc cactgtgtgt
     1741 tcctgtggtg gctatggaat tgctgctgtg tctgaagccc tcagatacaa gcagccactt
     1801 ttcccattct tgacaatcag ctataagcaa gaccaaccat ttgctaaagg taggtcatct
     1861 cggatgcatc tctgtcatat ccagcattca gaagttcttt cctgctgttt tcattctaaa
     1921 gcaggctatt gatttgtatc ctttgtcttt gtttttgttt gactggcaat catttgagag
     1981 aaatagcttg caggttttgc ctaaacagca cagtttgtta gatcaggcat tgtgggacat
     2041 cctctaatgc cagcacttgg aaggcaaagg caatgccagc ttggtctaca taaaaagttc
     2101 caatccagcc agagctacat aataacagac tttttaaaaa atggttttgt tagactttgt
     2161 gtactatgaa catgaaaatg cccagggttt catataaaaa atattattca acctgctatt
     2221 ttagccatgg agttaatctc ttagacttga ggctttaatt tgctgataat ttctctaaat
     2281 acctcccttt gctaatttcc tggtttctat gagaacataa cactaaaggc tctaatagag
     2341 gacgagtcct atggatactt tgcactgaag tgaagtgaaa gccgttcagg agagacttga
     2401 gatgtctaag tcactaccca aaagaaacaa actaggtagc tagttactgg gatgttaaaa
     2461 agtgaaactg cagcatagtt ttcaagtgga gtactcttct ggaatacagt ggaagttctg
     2521 agataacagt ttcccttggt atttgagatg actccatctt cacaaataaa gctgtgttac
     2581 tttt
//
