LOCUS       NM_001347657            1227 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus aspartate beta-hydroxylase domain containing 1
            (Asphd1), transcript variant 1, mRNA.
ACCESSION   NM_001347657 XM_006507738
VERSION     NM_001347657.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1227)
  AUTHORS   Mattiske,T., Lee,K., Gecz,J., Friocourt,G. and Shoubridge,C.
  TITLE     Embryonic forebrain transcriptome of mice with polyalanine
            expansion mutations in the ARX homeobox gene
  JOURNAL   Hum Mol Genet 25 (24), 5433-5443 (2016)
   PUBMED   27798109
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122863.4.
            
            On Mar 28, 2018 this sequence version replaced NM_001347657.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK134834.1, BQ175325.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-889               AC122863.4         89005-89893         c
            890-1003            AC122863.4         87451-87564         c
            1004-1227           AC122863.4         86721-86944         c
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 69.25 cM"
     gene            1..1227
                     /gene="Asphd1"
                     /gene_synonym="A830007L07Rik; Gm168"
                     /note="aspartate beta-hydroxylase domain containing 1"
                     /db_xref="GeneID:233879"
                     /db_xref="MGI:MGI:2685014"
     exon            1..889
                     /gene="Asphd1"
                     /gene_synonym="A830007L07Rik; Gm168"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..1113
                     /gene="Asphd1"
                     /gene_synonym="A830007L07Rik; Gm168"
                     /note="isoform 1 is encoded by transcript variant 1;
                     aspartate beta-hydroxylase domain-containing protein 1"
                     /codon_start=1
                     /product="aspartate beta-hydroxylase domain-containing
                     protein 1 isoform 1"
                     /protein_id="NP_001334586.1"
                     /db_xref="CCDS:CCDS85417.1"
                     /db_xref="GeneID:233879"
                     /db_xref="MGI:MGI:2685014"
                     /translation="MWKGGNQEAVIEGSGGELGVPGSWGLQDAACHLARASLPIMFPW
                     PLPLGSSALTMLLGALTSLFLWYCYRLGSQDMQALGTGSRAGGVSGMPDVCSQTGPRG
                     LGDSGEGPRAEGLVSRRLRAYARRYSWAGMGRVRRAAQGGSGLTGGAGVMGIQRPGLL
                     FLPDLPSSPFVPRDAQRHDVELLQSSFPAILRDFGAVSWDFSGTTPLPRGWSPPLAPG
                     CYQLLLYQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSVLLPGARLEGRCG
                     PTNARVRCHLGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDGPRVV
                     FIVDLWHPNVAGAERQALDFVFAPDP"
     exon            890..1003
                     /gene="Asphd1"
                     /gene_synonym="A830007L07Rik; Gm168"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1227
                     /gene="Asphd1"
                     /gene_synonym="A830007L07Rik; Gm168"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcctgtagg aggagtgaac aggagtgggg atgtggaagg gagggaatca ggaagcagtc
       61 atcgaggggt caggtggaga actgggggta ccagggagct ggggtctgca agatgcagct
      121 tgccacttag ccagggcctc tttgcctatc atgtttccat ggccactgcc tctaggctcc
      181 tcagccctta ctatgctcct cggagccctc acttctctgt tcctttggta ttgctaccga
      241 ctgggttccc aagacatgca ggccctgggg accgggagcc gagctggggg tgttagtggt
      301 atgcctgatg tatgttctca gactggccca aggggccttg gggattctgg agaaggaccc
      361 agggcagaag gtctagtgag caggcggctt cgggcctatg ccaggcgtta ctcctgggct
      421 gggatgggta gggtgaggcg ggcagctcag ggaggctctg gcctcacagg aggggcaggg
      481 gtcatgggca ttcagcgccc tggcttactt tttctaccag acctgccttc gtcccccttt
      541 gtaccacgtg atgcccagag gcatgacgtg gagctcctac agagcagctt tcccgccatt
      601 ttgcgggact tcggggctgt gagctgggac ttctcaggaa ctactcctct gcctcggggc
      661 tggtccccac ccctggcccc tgggtgctac cagctcctgc tgtaccaagc aggccgatgc
      721 caacccagca actgccggcg gtgcccagga gcctatcggg cactgagggg gctacggagc
      781 ttcatgagtg ccaatacctt cggcaatgct ggcttttccg ttctactgcc tggggcccgg
      841 cttgagggcc gctgtggacc caccaatgct cgggttagat gccatctggg cctgaagatc
      901 cctcctggtt gtgagttggt tgttggtggt gagccccagt gctgggctga agggcactgc
      961 ctcctggtgg acgactcctt cctgcacaca gtggctcata atggatcccc tgaagatggg
     1021 cctcgagtgg tcttcattgt ggacctctgg catcctaatg tggctggggc agaacgccaa
     1081 gctctcgact ttgtcttcgc tccagaccct tgagagacgc ttctggcacc tgagctgagt
     1141 gatgctgcac tcacggacag cctgagtggt ggtcaggacc tcttctccac ctcctcagcc
     1201 agcattgaat acaaattctc aatcctc
//
