LOCUS       NM_001009575            2785 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus armadillo repeat containing, X-linked 5 (Armcx5),
            mRNA.
ACCESSION   NM_001009575
VERSION     NM_001009575.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Zhou,J., McCarrey,J.R. and Wang,P.J.
  TITLE     A 1.1-Mb segmental deletion on the X chromosome causes meiotic
            failure in male mice
  JOURNAL   Biol Reprod 88 (6), 159 (2013)
   PUBMED   23677977
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Lopez-Domenech,G., Serrat,R., Mirra,S., D'Aniello,S., Somorjai,I.,
            Abad,A., Vitureira,N., Garcia-Arumi,E., Alonso,M.T.,
            Rodriguez-Prados,M., Burgaya,F., Andreu,A.L., Garcia-Sancho,J.,
            Trullas,R., Garcia-Fernandez,J. and Soriano,E.
  TITLE     The Eutherian Armcx genes regulate mitochondrial trafficking in
            neurons and interact with Miro and Trak2
  JOURNAL   Nat Commun 3, 814 (2012)
   PUBMED   22569362
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL671911.12 and AL683822.8.
            
            On Feb 4, 2022 this sequence version replaced NM_001009575.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133950.1, ERR3363658.4672100.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-246               AL671911.12        212269-212514
            247-298             AL671911.12        213099-213150
            299-375             AL683822.8         640-716
            376-2785            AL683822.8         1060-3469
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 57.26 cM"
     gene            1..2785
                     /gene="Armcx5"
                     /note="armadillo repeat containing, X-linked 5"
                     /db_xref="GeneID:494468"
                     /db_xref="MGI:MGI:2148026"
     exon            1..246
                     /gene="Armcx5"
                     /inference="alignment:Splign:2.1.0"
     exon            247..298
                     /gene="Armcx5"
                     /inference="alignment:Splign:2.1.0"
     exon            299..375
                     /gene="Armcx5"
                     /inference="alignment:Splign:2.1.0"
     exon            376..2785
                     /gene="Armcx5"
                     /inference="alignment:Splign:2.1.0"
     CDS             634..2454
                     /gene="Armcx5"
                     /codon_start=1
                     /product="armadillo repeat-containing X-linked protein 5"
                     /protein_id="NP_001009575.2"
                     /db_xref="CCDS:CCDS30408.1"
                     /db_xref="GeneID:494468"
                     /db_xref="MGI:MGI:2148026"
                     /translation="MIGSKTKRKAREESGASSKPGTNSPANAKGKAKNQTTKAVKAEP
                     KEEWGNQAEARDEAVARTQPAISTEPKTVTWKVKKKKDKTNARVMAQAKTELPAGPAL
                     VPHTKSDALPTSVVITVTKSEVKIDTGIEASLKGAAKATDKRSIKQKPEIKKEVCVKS
                     RAGDKAKEVCVKSSAGDKAKEVCVKSRAGDKAKEVCVKSRAGDKASIVINTTDEDEDY
                     VCSWFWTGEEPSVGSWFWPKEENPLQVYQPPPKVEEEPEPPDTFDYALKKKAAAWLRG
                     RFIVLVPIEEPQPSLPPDGNWTLVATLIETPLGIRPLTKIPPYGGPYFQTLADLKNQI
                     REKEKYGPNPNTCRCKSRTFSLEPVDFDKLVALLKLTRDPFIHEIATMIMGISPAYPF
                     TQDIVHDVGITVMIENFVNNPNAKKYPRTLNINANPDAPEEVKETEAHVNKVCRDILC
                     CPLNCSVQVEELKLLVSLSVKFDYHHVVIYYVRYFISLLNKGSVKIKFQILRVLLCLS
                     KNQANTRELISAEVMSSLVALFHKNESKANILHIIEIFENINFQFKKRAKLFTKEMFT
                     KSELISIFREAKEFDQKLQDLTDHSDPDVRDKVIRLILKL"
     regulatory      2756..2761
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Armcx5"
                     /note="hexamer: AATAAA"
     polyA_site      2785
                     /gene="Armcx5"
                     /note="major polyA site"
ORIGIN      
        1 gtagtcgctt cgtgagggac cggagagagg agtgggtacc gaaaggtgac agtaatttgc
       61 tagtcatggc ccttcatctt gtcctacatc ccaagctccc ggcaagcccc taaattacag
      121 tcgccgccat tgcctctgct ccctgcggcg gactgccgac ggcgtttgcc tgcctccttt
      181 ctgtgtggga aggcgccgcc ggagagaacg cacctaagaa aactgccttg gattcaagca
      241 gaacagcctt ccagaaatgc cctccgcgtt accccaacta tgttgcagaa tgtgataggt
      301 ttgccagatc tgctgcaggg cttgtcgcca gtggaaacag agaaaggagg aaacaatccc
      361 ttggcaagag cgcaggtcca acttcagtga cagatctgat ggccttggag tggctgaaga
      421 ccaccaccct ccacaggcct gcgccccagc acagctatcc tttatcttga gtgagcttcc
      481 tcaacatgct gtctatatga ttggcagaaa ctgtagttgg aaaggggctg aatgactact
      541 ggactttata tgaaaacacc tacttggggc tgactttcgg gcaaggctga gacaggggca
      601 tatttatatt aagctttgcc tttctctcga accatgattg gctctaaaac taaaaggaaa
      661 gctagagaag agtctggggc ttcctcaaaa cctggaacca atagccctgc caatgctaaa
      721 ggaaaagcca agaatcagac cactaaagcc gttaaggcag aaccaaaaga agaatggggg
      781 aaccaggctg aggctaggga tgaagcagtg gccaggacac agccagccat ttccactgag
      841 cccaagactg tgacctggaa agtaaaaaaa aagaaagata agactaatgc tagagtcatg
      901 gctcaggcta agacagaact cccggcaggg cctgctttag tgcctcacac caagtcagat
      961 gctctgccta catctgtggt cattactgta accaagtctg aagtcaagat tgacactgga
     1021 attgaggcat ctctcaaggg cgctgccaag gctactgata agcgcagtat taagcagaag
     1081 cctgagataa agaaagaggt ctgtgtcaaa tccagggctg gggacaaagc taaagaggtc
     1141 tgtgtcaaat ccagtgctgg agacaaagct aaagaggtct gtgtcaaatc cagggctggg
     1201 gacaaagcta aagaggtctg tgtcaaatcc agggctgggg acaaagctag tattgtcatc
     1261 aacaccactg atgaggatga agattatgtg tgttcctggt tttggactgg agaagagcct
     1321 agtgtagggt cctggttctg gcctaaagaa gaaaatcctc ttcaagttta tcagccccca
     1381 ccaaaggttg aagaagaacc tgaaccccca gatacattcg actatgcttt aaaaaaaaaa
     1441 gctgcagcat ggttaagggg caggtttatt gtcctggtcc ccattgagga accgcagcca
     1501 tctttacctc cagatgggaa ctggactctg gttgcaacct taattgaaac tcccctgggt
     1561 attcgacctt tgaccaagat cccaccttat gggggacctt acttccagac tttagccgat
     1621 ttaaaaaacc aaatccggga aaaagagaag tatggaccca atccaaatac ctgccgctgt
     1681 aaatcccgca cctttagttt agagcctgtt gactttgata agctcgttgc cctacttaag
     1741 ttaacgaggg atccgtttat tcatgagata gctacaatga taatggggat cagtcctgct
     1801 tacccattta ctcaagatat tgttcacgat gttggtatta ctgttatgat tgaaaatttt
     1861 gtcaataatc caaatgctaa gaaataccct agaactttaa atataaatgc caaccctgat
     1921 gcccccgaag aagtgaaaga gaccgaagca catgtaaata aagtttgtag ggacatactc
     1981 tgttgtcctt tgaactgctc tgtgcaagtg gaggagctaa agctgttagt gagcttgagt
     2041 gtgaaatttg attatcacca cgtggttatc tattatgttc gttatttcat ctcactgtta
     2101 aacaaaggaa gtgtcaaaat caagtttcag attttaagag tccttttgtg cttgtcaaaa
     2161 aatcaagcga atacaagaga actgatcagt gctgaagtaa tgtcctcact ggtcgctctc
     2221 tttcacaaga atgagtcaaa agctaatatt cttcatatca ttgaaatatt tgagaatata
     2281 aatttccaat tcaaaaaaag ggcaaaactg tttactaagg aaatgttcac taaatctgaa
     2341 cttatttcca tattccggga ggcaaaagag tttgaccaga aactccaaga cttaacagac
     2401 cacagtgacc ctgatgtgag agataaagtt atccgattaa tactcaaact ctgaatagct
     2461 gtatattctc acaaagcctt gaacattttt gtctttccaa tataaatcga atgcttatta
     2521 taattataaa tttgataact tatgctctct gtgttgaggg aggccatttt atggatgcta
     2581 gtcatcttga aagattgaat acttgctggt ttttattgtg ctatataata taaattaagg
     2641 tattttggta tttctgtaat gtaacccagt actgaaccta ttcgttctaa ataagctata
     2701 tttctgtgca ttatattgat ataagtgtat tttcgtattc catttacgtg tttttaataa
     2761 agttgcatgc taaacacaat gaaaa
//
