LOCUS       NM_028768               4628 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus armadillo repeat containing 8 (Armc8), transcript
            variant 1, mRNA.
ACCESSION   NM_028768
VERSION     NM_028768.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4628)
  AUTHORS   Newton,K., Dugger,D.L., Sengupta-Ghosh,A., Ferrando,R.E., Chu,F.,
            Tao,J., Lam,W., Haller,S., Chan,S., Sa,S., Dunlap,D.,
            Eastham-Anderson,J., Ngu,H., Hung,J., French,D.M., Webster,J.D.,
            Bolon,B., Liu,J., Reja,R., Kummerfeld,S., Chen,Y.J., Modrusan,Z.,
            Lewcock,J.W. and Dixit,V.M.
  TITLE     Ubiquitin ligase COP1 coordinates transcriptional programs that
            control cell type specification in the developing mouse brain
  JOURNAL   Proc Natl Acad Sci U S A 115 (44), 11244-11249 (2018)
   PUBMED   30322923
REFERENCE   2  (bases 1 to 4628)
  AUTHORS   Dey,A., Seshasayee,D., Noubade,R., French,D.M., Liu,J.,
            Chaurushiya,M.S., Kirkpatrick,D.S., Pham,V.C., Lill,J.R.,
            Bakalarski,C.E., Wu,J., Phu,L., Katavolos,P., LaFave,L.M.,
            Abdel-Wahab,O., Modrusan,Z., Seshagiri,S., Dong,K., Lin,Z.,
            Balazs,M., Suriben,R., Newton,K., Hymowitz,S., Garcia-Manero,G.,
            Martin,F., Levine,R.L. and Dixit,V.M.
  TITLE     Loss of the tumor suppressor BAP1 causes myeloid transformation
  JOURNAL   Science 337 (6101), 1541-1546 (2012)
   PUBMED   22878500
REFERENCE   3  (bases 1 to 4628)
  AUTHORS   Suzuki,T., Ueda,A., Kobayashi,N., Yang,J., Tomaru,K., Yamamoto,M.,
            Takeno,M. and Ishigatsubo,Y.
  TITLE     Proteasome-dependent degradation of alpha-catenin is regulated by
            interaction with ARMc8alpha
  JOURNAL   Biochem J 411 (3), 581-591 (2008)
   PUBMED   18215130
REFERENCE   4  (bases 1 to 4628)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 4628)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK004793.2 and AC156497.2.
            
            On Oct 8, 2009 this sequence version replaced NM_028768.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004793.2, SRR9219383.167492.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1430              AK004793.2         2-1431
            1431-1431           AC156497.2         109758-109758
            1432-2129           AK004793.2         1433-2130
            2130-2130           AC156497.2         131464-131464
            2131-2514           AK004793.2         2132-2515
            2515-4628           AC156497.2         134943-137056
FEATURES             Location/Qualifiers
     source          1..4628
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 51.74 cM"
     gene            1..4628
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /note="armadillo repeat containing 8"
                     /db_xref="GeneID:74125"
                     /db_xref="MGI:MGI:1921375"
     exon            1..298
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            299..375
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            376..447
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            448..590
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            591..688
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            689..781
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            782..862
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            863..938
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1029
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1090
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1291
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1292..1387
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1470
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..1552
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..1639
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1640..1732
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1733..1882
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1883..1978
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            1979..2074
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            2075..2147
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            2148..2241
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     exon            2242..4628
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2903..2908
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /note="hexamer: AATATA"
     polyA_site      2926
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /note="major polyA site"
     regulatory      4608..4613
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
                     /note="hexamer: AATAAA"
     polyA_site      4628
                     /gene="Armc8"
                     /gene_synonym="1200015K23Rik; Gid5; HSPC056"
ORIGIN      
        1 ccacctctga ccccagccga gagtagctgc tgtttctgag aggacgattc gtaagccggg
       61 gtccggcgcg gtttcccaat ccctcgccct tctgcccagc cccttcggtg ctcgagcgac
      121 gcctggggcg cggtctgttc tgggcagctt gcctgggctt tctacagagg ctccggctgc
      181 aggtcacata ggtggctgtc gaaagtgccg gccgcgcgcc ggcgccggca gcagccgggt
      241 gggaaggctc aagatggcgt gcctgttgga gaccccaatc cgcatgagcg tcctctcgga
      301 ggtaacagct agcagtcgcc actatgttga caggctattt gaccctgatc cccagaaagt
      361 tctccaaggt gtcatagaca tgaaaaatgc tgtaattgga aacaataaac agaaagccaa
      421 cctcatcgtt ctaggagcgg ttccaagatt gttgtatttg cttcaacaag aaacctcaag
      481 tacagagctg aaaactgaat gtgcagtggt gttagggagt cttgcgatgg gcacagaaaa
      541 caatgtcaag tctctactag actgccatat tatccctgcc ttactacaag gactactgtc
      601 cccagacctg aagttcattg aagcttgcct ccgatgcctc cggacaatct tcaccagccc
      661 tgtcactcca gaggagctac tgtatacaga tgctacggtg ataccacacc tcatggcact
      721 gctgagcagg tcccgctaca cccaggagta tatctgccag atcttctcac actgttgcaa
      781 agggccagat catcaaacaa ttttgtttaa ccatggggca gtgcagaaca ttgctcatct
      841 cctaacctca ccctcttaca aagttcgaat gcaagcactg aaatgcttct ctgttttagc
      901 ctttgagaat ccccaagtat cgatgaccct ggtaaacgtt ttggttgatg gggagttgtt
      961 accacagata tttgtgaaga tgttacagag ggataagcct attgagatgc agctcacgtc
     1021 agcaaaatgt ttaacttaca tgtgcagagc tggagcaatt cgcacagatg acagctgtat
     1081 tgtattaaaa actttgcctt gtttggttcg aatgtgcagt aaggagaggt tactagagga
     1141 gagagttgaa ggagctgaga ccctcgccta tctgattgag ccagatgttg agctgcagag
     1201 aatcgctagc ataaccgacc acctcattgc catgctggct gactatttca agtatcccag
     1261 ctcagtgagc gccatcactg acattaaaag gcttgatcat gacttaaaac atgcccatga
     1321 gctccgccag gctgcgttca agctctatgc ctctcttgga gcaaatgatg aagacatccg
     1381 gaagaagatc attgagactg aaactatgat ggaccgaatt gtgactggct tgtctgagtc
     1441 tagtgtcaag gtgcggttag ctgctgtcag atgtttgcac agtttatcca gatctgtaca
     1501 acagcttcga accagtttcc aggatcatgc ggtgtggaaa cctttaatga aggttttaca
     1561 aaatgcaccc gatgaaatcc tagtagtagc atcttccatg ttatgtaacc ttcttcttga
     1621 attttctcca agtaaagagc caattttgga atcaggagct gtcgagctgc tctgtgggtt
     1681 gacacagagt gaaaaccctg ctctacgagt gaatgggatt tgggctttaa tgaatatggc
     1741 atttcaggcg gaacaaaaaa taaaagcaga tattttacga agtctgagta ctgaacagtt
     1801 attccggtta ttgtcagatt ctgatatgaa tgtgctgatg aagacattgg ggcttcttag
     1861 aaatctcctc tccactcggc ctcatataga taaaatcatg agtactcatg ggaagcagat
     1921 tatgcaagct gtcactctga tactggaagg ggagcatagc attgaagtca aagagcagac
     1981 cctgtgcatc ctagccaaca ttgcagatgg gacaacagca aaagagctta ttatgaccaa
     2041 tgatgacatc ctgcagaaaa tcaaatatta catgggtcat tcacatgtca aactgcagct
     2101 tgctgccatg ttttgtatat caaacctcat atggaacgaa gaggaaggtt cacaggaacg
     2161 ccaggataaa ttacgagaca tggggattgt agatattcta cacaaactga gtcagtcggc
     2221 agactcaaac ctctgtgaca aggcaaagac ggcgctgcag cagtacctgg cgtgacagga
     2281 gagccctggg cacctgcgag caccccacac ctttgtaaaa ggaagtacag gagctagcct
     2341 catttgactc cttctatttg cacacgtcac cttggactgc agggagctgt tttgcgaagc
     2401 agtttagtaa gcttagatct cggattcatc ttgagaacat ttttttgagg tagtgatttc
     2461 ctccgaggac tgttgtgttg tgttttgttt tgttttctga gctacctgga ctctttatta
     2521 gaacaatcag tcatttcctt tggacctaca attttttgcc tatgctgcag ccactttgtg
     2581 agcaagaatg atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgc
     2641 gcgcgcgagt gtgcacatgc acaggagtca ggatgaatga ccgtgtgggt gagggatacc
     2701 tcagattttt cttttcttat tttgtgtgaa aatctctttt ctacagattt tccagggttt
     2761 aagcattgct tgctgtacaa aaaaaaaatt tactgaatta tatacagttt gaatgaaatg
     2821 ttattttaaa agcaaaacaa ttgtttagtg ttccataaaa gttatgttga attttggtca
     2881 gatgaatatt tgtaagtaaa aaaatatatg catttctgaa cctcaactta catagatttt
     2941 ctttataaaa acaaacaaaa aaaaaaaaga caaaaaaaga caaagaaaaa gttggctaca
     3001 gtctgcctga ataacaggca ctgtacatgg tgctgtgcag atggtaagct agcatcttac
     3061 tgccatcaat attagcaggt acaaagcctt tgggttttgt tttattattt gtttttttcc
     3121 tagcctaatt cagtaagttc tcaggcttcc aaatcagaag gatggtggaa tagagcaaag
     3181 tgagggatgg tcactgtagg ctttgaaacg tcaaagggag gctgatagtg gaagccttgc
     3241 ggggaccagg tgggctggct ttgacaggac ggggaatcga aagcttccca gcaccccaac
     3301 gtcctgtcat tagtgtggca gtatctggca gggtctcaga gcaaacctgg agagcaggtt
     3361 gcctggaaac aagccagatc accgggtgct tcccgaggca gcgtttgctg ctgggagact
     3421 agcttgttct gcaaacatgt cctagaaaga ggcagctgct taagtgcccc agcaaaggcc
     3481 atgcagtagc tggggacagc tgggtgctgt gctcatccgg aatgaaatag gaagtctttt
     3541 tcctggatga agctaaaata cttcatgttg agaaaaggga ggagaacctc cccatgatga
     3601 ctaaaaatgc atgggggcgg gggtgtagaa tctgcttcaa cttccggtcc cttcaaattg
     3661 aactcatcag agataggaac aaacagcctg ccttcctgtg atcagcaggg cttagcaggc
     3721 agtgtgtgcg gtgtctgcag ctgctggggc ccacaccctc cctcccacca gccacacccg
     3781 acagggctgc tcacctgaga gctggtctgt caccagcctt cgccttcctt ggaagactta
     3841 agtatggttg attgcaaatg aatgttttta aaatgttgta tttaatgcaa tgcttcctgc
     3901 tctccatatg gccacccaag atacaaacac agagatttcc aagttgtttt ttccagaaca
     3961 tcactgactt taaaagctgt cacaacagaa cttgggtttt gtacagacgt cagagtgcta
     4021 atgtgagaaa acctgggaat gaagccttcc ccgggccacc tattgccgcc gctggtgttg
     4081 gggctgtacc ctccgatagc gttttgtaac aagacgctac agcgttggtt ttagaaagta
     4141 ccagtaactg taaagaaacc aataacacgt tgctgagaca atcgtgaacc caaaatagca
     4201 tgagagggct gaagaccctt tgaactctgt ggataaatct tgcctgtggg tataggcaat
     4261 ggtcacataa gaagtgcttt actcgaatta acttctctga tttgaatgaa gggaaatgta
     4321 tttattaaaa caaagctgtg tgctgcttta tgcaggtgca gtatttggtc agcaaggaag
     4381 tggggagagt gggggcgtgg tcttatgtct acacccaagt tcttaacgca gcttctggcc
     4441 ctaatactgc attctgttct ccctttgtgc cctgattgta acccaaaatt tataaactag
     4501 aaaagaatgt caaatttaat aagttgcatt ttttttctta agcactttat tcagaacaat
     4561 acatgttctt ctggtagtgt ttggataata tgattttaac acgtgctaat aaaagccaag
     4621 aaaagtca
//
