LOCUS       NM_001418091            2432 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ADP-ribosylation factor-like 9 (Arl9), transcript
            variant 1, mRNA.
ACCESSION   NM_001418091 XM_006535050
VERSION     NM_001418091.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   3  (bases 1 to 2432)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 2432)
  AUTHORS   Louro,R., Nakaya,H.I., Paquola,A.C., Martins,E.A., da Silva,A.M.,
            Verjovski-Almeida,S. and Reis,E.M.
  TITLE     RASL11A, member of a novel small monomeric GTPase gene family, is
            down-regulated in prostate tumors
  JOURNAL   Biochem Biophys Res Commun 316 (3), 618-627 (2004)
   PUBMED   15033445
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114666.31.
            
            On Mar 15, 2023 this sequence version replaced XM_006535050.5.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849381,
                              SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1545              AC114666.31        30553-32097         c
            1546-1708           AC114666.31        26919-27081         c
            1709-1884           AC114666.31        26146-26321         c
            1885-2432           AC114666.31        22594-23141         c
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 41.45 cM"
     gene            1..2432
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /note="ADP-ribosylation factor-like 9"
                     /db_xref="GeneID:384185"
                     /db_xref="MGI:MGI:1915496"
     exon            1..1545
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..2061
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="ADP-ribosylation factor-like protein 9 isoform
                     1"
                     /protein_id="NP_001405020.1"
                     /db_xref="GeneID:384185"
                     /db_xref="MGI:MGI:1915496"
                     /translation="MERGKTKKESQRFSSSTRETAVKVEKEKKKDVEVKSKEKGKEKE
                     KEEEKKKSVELKNKKGKEIGKGEERGKEVGLKINQGKEKEEKKKKSVDLEIKENGKDK
                     GKEEEKKKSVDLKTKENGKDKGKEEEKKKSVDLKTKENGKDKGKEEEKKKSVDLKTKE
                     NGKDKGKEEEKKKSVDLKTKENEKDKGKEEEKKKSVDLKTKENGKDKGKEEEKKKSVD
                     LKTKENEKDKGKEEEKKKSVDLKTKENGKDKGKEEEKKKSVDLKTKENGKDKEKEEKK
                     RKSADLKTKETGKEKEEEKRKSADLKTKETGKEKVEEKRKSADLKTKETGKEKVEEKR
                     KSADLKTKETGKEKEEEKRKSADLKTKETGKEKEEEKRKSADLKTKENGKDKGKEEEK
                     RKNDEKGKENGTGMEAKEEQGTEKEKEQVTEQVKENTSTSIKTLYPPPVRDLGPGLPR
                     SQRASRPAGSVTSSWPKYAENRVFSEGFCLWMGGSAKVENKQILVLGLDGAGKTSVLH
                     LLASNRVQHSTAPTQGLNAVHINSEDRQMEFLEIGGSEPFRSYWEMYLPKGWLLIFVV
                     DSADHKRLPEAKKYLHQLINPNPGLPLVVFANKQDLEAAYHITDIHDALALSEVGNDR
                     KLFLFGTQVTKNGSEIPSTMQDAKDLITHLATDM"
     exon            1546..1708
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1709..1884
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1885..2432
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2155..2160
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /note="hexamer: AATAAA"
     regulatory      2162..2167
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /note="hexamer: AATAAG"
     polyA_site      2176
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
     polyA_site      2185
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /note="major polyA site"
     regulatory      2401..2406
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      2432
                     /gene="Arl9"
                     /gene_synonym="1700110A09Rik"
ORIGIN      
        1 acaccagggc cacacctgcc aggatcgggg gcggctccgg cgcgcgggcg cgcaggggac
       61 agaaagggaa aggcggtggc ggggatggag agggggaaga ctaagaaaga gagtcaaagg
      121 ttttcttcga gcactaggga aacagcagta aaggtagaga aggaaaaaaa gaaggacgtg
      181 gaagtaaaaa gcaaggagaa ggggaaagag aaggagaagg aagaggagaa aaagaagtct
      241 gtggaactga aaaacaagaa ggggaaagag atagggaaag gagaagagag agggaaggag
      301 gtaggtctga aaatcaacca agggaaagag aaagaagaga agaaaaagaa gagtgtggac
      361 ctggaaatca aagagaatgg gaaagacaag gggaaggagg aagagaaaaa gaagagtgtg
      421 gacctaaaaa ccaaggagaa tgggaaagac aaggggaagg aggaagagaa aaagaagagt
      481 gtggacctga aaaccaagga gaacgggaaa gacaaaggga aggaggaaga gaaaaagaag
      541 agtgtggacc tgaaaaccaa ggagaatggg aaagacaagg ggaaggagga agagaaaaag
      601 aagagtgtgg acctgaaaac caaggagaac gagaaggaca aagggaagga ggaagagaaa
      661 aagaagagtg tggacctaaa aaccaaggag aacgggaaag acaaagggaa ggaggaagag
      721 aaaaagaaga gtgtggacct gaaaaccaag gagaacgaga aggacaaagg gaaggaggaa
      781 gagaaaaaga agagtgtgga cctgaaaacc aaagagaatg ggaaagacaa ggggaaggag
      841 gaagagaaaa agaagagtgt ggacctgaaa accaaggaga acgggaaaga caaagagaag
      901 gaagagaaga aaagaaagag tgcggacctg aaaaccaagg aaaccggaaa agagaaggaa
      961 gaagagaaaa gaaagagtgc ggacctgaaa accaaggaaa ccggaaaaga gaaggtagag
     1021 gagaaaagaa agagtgcgga cctgaaaacc aaggaaaccg gaaaagagaa ggtagaggag
     1081 aaaagaaaga gtgcggacct gaaaaccaag gaaaccggaa aagagaagga agaggagaaa
     1141 agaaagagcg cggacctgaa aaccaaggaa accggaaaag agaaggaaga ggagaaaaga
     1201 aagagcgcgg acctgaaaac caaggagaat gggaaagaca aagggaagga ggaagagaaa
     1261 aggaaaaatg acgagaaagg caaggagaac gggacaggga tggaagccaa ggaggagcaa
     1321 gggacggaga aagagaagga acaggtcaca gaacaggtca aggagaacac cagcacctcc
     1381 attaaaaccc tgtacccgcc gccggtaaga gacctgggac cgggacttcc gaggtcacag
     1441 cgggcatcca gacccgctgg ctctgttacg tcgtcgtggc cgaagtacgc agagaatcgg
     1501 gtcttttccg agggcttctg tctatggatg gggggaagtg ccaaggtaga aaataagcag
     1561 atcctagtac taggtctgga tggagcagga aagaccagtg tcctccactt gctggcttcc
     1621 aacagagtcc agcacagcac agctcctacc caaggtttaa atgcagttca catcaactct
     1681 gaagataggc aaatggagtt cctggagatt ggtggcagtg agccattccg ctcctactgg
     1741 gagatgtacc tccccaaggg gtggctgctg atctttgtgg tagattcagc tgatcacaaa
     1801 cgattacctg aagccaagaa ataccttcat cagttaatta atccaaatcc agggctccct
     1861 ctcgttgtgt ttgccaacaa acaggatctc gaagcagctt atcacattac agatatccac
     1921 gatgctttgg ctctgtctga agtggggaac gacagaaagt tgttcttgtt tggaactcag
     1981 gtgaccaaga atggttcaga gataccctcc accatgcaag atgccaaaga cctgattaca
     2041 catctggcca cagatatgta gaagagacta ggacccgccg gcccattgct cggctcccat
     2101 ccacctacca ccagaggggc tgaaaggcag gctcagccaa aactttccac tttcaataaa
     2161 aaataagcca tggttattct cgcaatgcag agcgtctata cggagaacac tagccaattc
     2221 actaggattt tgttctgttt tgtctttaga gttttaactt taaaattttt aaattatttg
     2281 gagagaaatg cagatttttg ctttcggtgc caagagtaga accctggacc tcagacatgt
     2341 taagcatgcc atctacaccg gggctgtacc cactcaccgg gattaagggt tttactcaaa
     2401 agtaaagaat gtattggcaa gccttcatcc ta
//
