LOCUS       NM_182994               5212 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ADP-ribosylation factor-like 5A (Arl5a), mRNA.
ACCESSION   NM_182994
VERSION     NM_182994.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5212)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5212)
  AUTHORS   Liu,X., Jiao,Y., Cao,Y., Deng,N., Ma,Y., Hasty,K.A., Kang,A.,
            Chen,H., Stuart,J.M. and Gu,W.
  TITLE     Decreased expression levels of Ifi genes is associated to the
            increased resistance to spontaneous arthritis disease in mice
            deficiency of IL-1RA
  JOURNAL   BMC Immunol 17 (1), 25 (2016)
   PUBMED   27480124
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5212)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   4  (bases 1 to 5212)
  AUTHORS   Ko,M.S.
  TITLE     An 'equalized cDNA library' by the reassociation of short
            double-stranded cDNAs
  JOURNAL   Nucleic Acids Res 18 (19), 5705-5711 (1990)
   PUBMED   2216762
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL845467.3.
            
            On Nov 17, 2006 this sequence version replaced NM_182994.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC059931.1, AK147525.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-285               AL845467.3         129370-129654
            286-346             AL845467.3         137548-137608
            347-494             AL845467.3         138033-138180
            495-578             AL845467.3         142099-142182
            579-730             AL845467.3         149187-149338
            731-5212            AL845467.3         151812-156293
FEATURES             Location/Qualifiers
     source          1..5212
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 29.98 cM"
     gene            1..5212
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /note="ADP-ribosylation factor-like 5A"
                     /db_xref="GeneID:75423"
                     /db_xref="MGI:MGI:1922673"
     exon            1..285
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /inference="alignment:Splign:2.1.0"
     CDS             240..779
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /note="ADP-ribosylation factor-like 5"
                     /codon_start=1
                     /product="ADP-ribosylation factor-like protein 5A"
                     /protein_id="NP_892039.1"
                     /db_xref="CCDS:CCDS16033.1"
                     /db_xref="GeneID:75423"
                     /db_xref="MGI:MGI:1922673"
                     /translation="MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT
                     SPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVT
                     REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL
                     TGEGLCQGLEWMMSRLKIR"
     exon            286..346
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /inference="alignment:Splign:2.1.0"
     exon            347..494
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /inference="alignment:Splign:2.1.0"
     exon            495..578
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /inference="alignment:Splign:2.1.0"
     exon            579..730
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /inference="alignment:Splign:2.1.0"
     exon            731..5212
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5186..5191
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /note="hexamer: AATAAA"
     polyA_site      5212
                     /gene="Arl5a"
                     /gene_synonym="2410015N24Rik; 2810410P22Rik; Arl5"
                     /note="major polyA site"
ORIGIN      
        1 ggaggacggt ggcccgcgag gttcgagcag acaacgcggc ggcgatgtcc gcgagccagg
       61 cgagcgccgc ggcggtagcg gcggggcctc gcgcgtggct gggcggcctg ggctgcggcc
      121 tccccgcggg tccctggaag cgggcgcgcg gccggcgcgg gagcagaggc ggaggccccg
      181 gcgcgtcctt ctgccccgca gcctgagccc gggaggctgg agggctccgc tgcccgagga
      241 tgggaattct ctttacccgg atctggaggc tgttcaatca ccaggagcac aaagttatca
      301 ttgttgggct ggacaatgct gggaagacga ccatccttta ccagttttcc atgaatgaag
      361 tcgtacacac atctcctaca ataggaagca atgtggaaga gattgtggtt aataataccc
      421 gtttcctgat gtgggatatt ggtggccaag aatcacttcg tccttcctgg aacacgtact
      481 atactaacac agagtttgta atagttgttg tggacagcac agacagagaa agaatttcgg
      541 taactagaga agagctctac aagatgctag cccacgagga cctaagaaaa gctgggttgc
      601 tgatttttgc taataaacaa gatgttaaag aatgcatgac agtagcagaa atctcccagt
      661 ttttgaagct tacttctata aaagaccacc agtggcatat tcaagcatgt tgcgctctta
      721 ctggcgaggg gttatgccaa ggacttgaat ggatgatgtc acggctgaag atcagatgat
      781 ctcttctgac ccctcctcac agactctgta taaagaaagt gctggacttt tcctgaaagc
      841 tgcaaaaaaa tggtttagat atatttataa taaactgact taagagtttt ctataagaag
      901 aaaattaaga ccacttattt gaaaacaaag atgaaatgtc accacccgtt tgcgctctca
      961 ttccttccaa gcctgtgact ggtattttct catgatgaat cctctcagga catggcagag
     1021 cttggcgagt acaaagggag aggaagacat ttgaacttta gaactttgtt tcagcgtgac
     1081 tctcccaccc tgccccaagt tgaatgttcc cttcacattg aatcaaatac aaatcagcac
     1141 agatactgtt tccagttttt aaaaatgtaa tattatggaa agtattttgc ttcaagttga
     1201 atatgtattg tgtatatacc tcaagttcag gttaatggct ttgatttgtg ctctaaagca
     1261 aagcaaataa cacaggttaa tggtaacttg ttgttctcct gatctaactg agtaccacct
     1321 ttggtgttaa gtgtcattgt ttagtttacc ctctgttctc tatgttgtcc taacaagcca
     1381 accccaacca acaattgtta agctgctcct taaaaatgaa acaggagaaa gcctggcatt
     1441 gtatacctgt ttttgttgct cagtaattca ggtggaaata tataacgcaa gtgggtagag
     1501 cgtctgccag actcctggcc tggtgtgcct gggtagaatt acacgataag caatggtcag
     1561 actttccttc tgtggatcct tatgccaatt cagctactaa tcggtcattc ataaatggtg
     1621 attaaaatga tcaggtaatt tttaattgaa aatcatggtg tgaaatatat ctacccaaag
     1681 aggtaacatc ctataaatag tagtaattaa tttagctgca acctttttag gtattaaatt
     1741 acatgacaaa cagttaaaat gaatttaaga ataaacataa ggcatcgttt tcaatgaaca
     1801 gtaataattt cccaatttac agattagtgt ctacaaaggt tttcttacat cttcttccat
     1861 tgcataatat gccttgtgta atagttaaga aatcattttt tctgaatgac ttaaaaaatt
     1921 tgattgaaaa tttggcaaat tacattattt gtactagaat ttgacctaaa acacttttta
     1981 tgtttgttaa aaatatttgc tttttaaaat ttagttaaaa attgaagtat ttctgtcata
     2041 gacaaaatta ctctgtttta acatattcct ggtggactat atcaaccttt tgtgccctga
     2101 aaacttgaag gttaacccaa actgtcaaga tttaggatag tcaagaaaag gtttaactag
     2161 ttttagtatc agactttaaa atttcttaaa gattttggta agaaatagaa gtccacatac
     2221 aagcattgag gaaactgaaa aatctttgta agacccttaa tggctaaagc cattggctgt
     2281 aatgagtgtt actgtgtgag gctttgtgta tgagatctgt gctgtaaggc tcccagtgtt
     2341 ccttcagcat taatgctttc ccacctgctc caagagaact agccctcaac cagtgctgcg
     2401 gcctgttcat atgctctcat actttttcaa atcatgatga gaatttttct cctatatact
     2461 aaatcctctt aaagactcaa ctctttgtag ttttgtcaaa gacaaatact ctgtaaagtc
     2521 ccccacctac cccagatcta cagcttttta gcttttaatt tgaatcatct gcatagttgc
     2581 ttggatcatt gttacatcag ttcagcgcat agtagcaatt ctggtgtggc caaggtgttg
     2641 gctgaagttt attcttcatt ggatgtttaa agcatttact ccattgttaa ggttggcatc
     2701 atatagtcag ttactgacat ggcataagac agcatgaaac tttaccacat ttataaatat
     2761 gagggatttt ttcttttgtt ggtttttaac ccttttagac taagcctcaa aaatattatc
     2821 atacctgtgt acttgtacat taaaaacaaa attattgctg agtaagaaga tatttaatat
     2881 atgaaactct cataactgtc attaacagta ttaattaggt ctaaataccg tggagcagcc
     2941 ctgatatcat gctgacagct tacgtgtcag agggcagaac tcagccagtc ctgtggtttc
     3001 aggtgttaat atgtaaacaa gcatctcatt taacttcact gtgctcagct ttgaaaagaa
     3061 caaagattta tacctctgta catgtggata gatagaagtg tcctgttttg atactaattt
     3121 tgaaagttga ttatcttctc ttgatatctt ggttaaaact ggccacaaga taaaccattt
     3181 ggatatattt gattttgtca taacatttgt aaagtatatg tttctcatga gactgagggt
     3241 tttattttta aaatcccctt acatttctag cacaccttgg ccatcacagt agacaaagaa
     3301 tacagagaag gcagtgggtt aggcagtggg ggatgggttt ttggtttttt ttttgttttt
     3361 ttttgggttt ttttggtgac attttctctt aagaaagtgc tttagcaccg ctggctggca
     3421 tctttaatgc aggtggtaaa cctaattcca taagcatggc ctgcccgagc cagaaggaag
     3481 aagagcttgc tccctggcct gaggaagtgc ctcgtaggta gtcatggaag tcacaggtaa
     3541 gtgcaggagc ttgaagacag gcaagaggtc tctaaggtgt tcctttcctt tgtctgagtg
     3601 tatagtatta agatgcctag aagagagatg gttttgttcc actcttacag gcactttata
     3661 tttcttgctg taactacagc aatcacatac agtacagaca acctcaaaaa tctgtttata
     3721 ttagtgtaaa tagaaaaatg gtagaccgct gtctagtttt ctccgcaggc atttttggga
     3781 gtgtatctat agcctgttct actttgttaa tgggggataa cagcacatcc tagatcatgt
     3841 gtgaactttg gggtttttaa ttgcccttgg tatcctgata ttctcatttt caaggtgagg
     3901 taaagacagg gtttccttac ttaacggatt tgagcgcttc tgttctccaa acacaatgga
     3961 atttcttgtt caagagcagc ttccagagtt gagccagccc tcgctgcctt gggtgcttgc
     4021 ttaccaccag tcaaggttgc tctgaacttt cccataacca ttatccccca agaccaccag
     4081 gctctgagtg acctctctaa ttctgtcttc ccacccacca gtgacttgac tgctctgcac
     4141 ctttgcatct tcagagctgc tgcgtctatc aggagagcag gatcagatta tggtatccag
     4201 ataccagtag aagaattgga tgttatacta tacttagcac cttaattcta cttaacattt
     4261 acttcttaag ctgacaacta gattcagaaa tacaagaaaa atagactatg tcaggtcctc
     4321 aagttatgag ttaggaccaa cgactattaa cttgcattca cattatcctc acagaaccaa
     4381 gagtggcaat gctttggaga atagcagtcc agcctagtta acatggggaa agatgacaac
     4441 attgtatgta gtgttgaacc tgaagacatc ctacaatgat ttcccacact ctatttttcc
     4501 ttatgtttgc ttaaatagca aaaatcaaca ctaaatgtct aaaggaattt gtaatttgag
     4561 acctagtatt tttacacaat aaacctgcta aaacaggctt taaaagacag caaaataagc
     4621 catatgtagt ggtgttaaga ctgtaatccc agcactcagg aagctgagac aggagaattg
     4681 ccgggagtac aaagtcaacc ggagctaaat aatatcagcc accaggacta cataacgaaa
     4741 gattgccaca gaggaaagga aggaagaaaa agccagcaat caaccatcat gtgtttctgt
     4801 agaatcagat gtaataggaa acatagtttc agattgcttc tgacaaagtc tgtgccacat
     4861 tcctcacagc aggtgtgact ctttaagacc atgatagtgg agtaagggaa agagtgagat
     4921 gtagcgctct ggatgcttaa aaagtaagtg cttggattta accctaaagt ggtttgaaat
     4981 tgggaagaag tgtgacagga tacagttggg ctaattatgc aatatttcat ctgtttaatt
     5041 ttctaactct gtattgttcc taaagacgga tgaatgagtc tctgtggtgt tgcctgctca
     5101 ttgtgcatac ccttggtaga catttctcat agtgtgtact taaaaagtgc ctgacattga
     5161 tttgtgttga tttctaagtc catgtaataa atgatacatg ttttctatga ta
//
