LOCUS       NM_028947               1742 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus ADP-ribosylation factor-like 13A (Arl13a), mRNA.
ACCESSION   NM_028947 XM_136037 XM_904411
VERSION     NM_028947.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK016872.1, AL671915.8 and AL672215.11.
            
            On or before Jun 26, 2009 this sequence version replaced
            XM_904411.2, XM_136037.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC100522.1, AK016872.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                AK016872.1         2-20
            20-20               AL671915.8         151600-151600
            21-1665             AK016872.1         22-1666
            1666-1742           AL672215.11        3020-3096
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 55.9 cM"
     gene            1..1742
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /note="ADP-ribosylation factor-like 13A"
                     /db_xref="GeneID:74448"
                     /db_xref="MGI:MGI:1921698"
     exon            1..157
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            158..238
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..1298
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /note="ADP-ribosylation factor-like 13"
                     /codon_start=1
                     /product="ADP-ribosylation factor-like protein 13A"
                     /protein_id="NP_083223.1"
                     /db_xref="CCDS:CCDS53182.1"
                     /db_xref="GeneID:74448"
                     /db_xref="MGI:MGI:1921698"
                     /translation="MFRLLTACWSRQKTTEEKQRNVTIIVIGLDNSGKSRLIEAFQRL
                     IPSKMHKEMRPTQTTLLLDDYQVSIYDLTGDVKGREKWSSYYAQAHGLIFVVDSSDIA
                     RIQEVKIILTRIMFDKRVSGKPILILANKQDKKNALLPCDIIEYLLLERLVNETRSMC
                     RVEPCSTIKRIPKRQQKPIVVGLRWLLAAIGDQYSELYTRQQIPNMSISTSKNIRGCG
                     ERCLSDSLPNRVRHSNRQHFDKRQHMEHRQHVEQRHFEKRQHFEARQRLIQRSLDARP
                     LKPILQKDGFRIRPKKNMSVTFALDVIMEEGECSRKIGAPTISKPCSSQCYDTKTPDP
                     SVDVSLFKAHKPKKRIETWDTEEMFLEDPREETFHSCD"
     exon            239..309
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            310..559
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            560..665
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            666..853
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1025
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1206
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1293
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1742
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1721..1726
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /note="hexamer: AATAAA"
     polyA_site      1742
                     /gene="Arl13a"
                     /gene_synonym="4933422M21Rik; Arl13"
                     /note="major polyA site"
ORIGIN      
        1 gttagaatat tgcctaccct ttaagtggac atctgggctg gattaatcta tccagaaggc
       61 ttaaaagctc aacaaatctc tctgaaattc aacacggcaa acactttttc aactaaaaca
      121 ccaacttgtt atcagataaa tagttaacca cctccagcat ttaaagacca agctgaatca
      181 tgttccgact tttgactgcc tgctggtctc gtcaaaagac cacagaagaa aaacaaagga
      241 atgtgactat cattgttatt ggtttggaca actctggcaa aagtcgtctc atagaggcct
      301 tccaaagact aattcctagc aagatgcaca aagaaatgag accaacacaa acaacgcttc
      361 tactagatga ttaccaagta tctatctatg acctaactgg agacgtaaaa ggccgtgaga
      421 aatggtcaag ttactatgct caggcccatg ggcttatttt cgtggtggat tctagtgaca
      481 tagcacgcat ccaggaagtg aagatcatct taactcgcat aatgtttgac aaaagggtct
      541 cagggaaacc catcttaatc ctggcaaaca aacaagacaa gaagaacgct cttttgcctt
      601 gtgatatcat tgaatatcta cttctggaaa ggctcgtgaa tgagacgaga tccatgtgcc
      661 gcgtggagcc atgttcaacc ataaaacgca ttccaaagag gcagcaaaag ccaatagttg
      721 tagggctgcg atggctacta gctgccattg gggatcaata cagtgagctg tatactcgac
      781 aacaaatacc caatatgagc atctcaacct ccaagaacat cagaggctgt ggagaaagat
      841 gcttatcaga cagcttacct aacagagtca gacacagcaa cagacagcat tttgataaaa
      901 gacaacacat ggagcataga cagcatgtgg agcaaaggca ttttgagaaa agacagcatt
      961 ttgaggcaag acagcgctta atacaacgtt ctctggatgc taggccccta aagccaattc
     1021 tacagaaaga tggttttcga ataaggccca aaaagaatat gtcagtaaca tttgctctag
     1081 atgtcatcat ggaggaaggt gaatgttctc ggaagattgg agctccaacc atcagtaagc
     1141 cttgcagtag tcagtgttat gatacaaaga ctccagaccc atctgttgat gtcagtcttt
     1201 tcaaagctca taagcccaaa aagagaatag aaacctggga cactgaagaa atgttcttgg
     1261 aagaccctcg tgaagaaacc ttccattcct gtgactaagc agacgactaa aagggtaaac
     1321 cgaggaacag caaaatcttc atcccctcta ccaccttatg gtaactgggc acatctccag
     1381 aagcagcaga aacacccagt ctttgtttct cactggataa cacctctaca gcccacatac
     1441 aagttcacgc acactaacat cacatccttg agaaccactg tttctgcaac accagtgtgg
     1501 tagccagcaa gttcatccat actcatcaag agccccggga agtcatggac tttccacctg
     1561 aacgaagaag agcaaaagac ttcccatttg tactgagatg ctcctgacaa agcttacgga
     1621 tagactgtca cacgcaactg caactgagcc ttagaccaac agggttactt tagaatcaca
     1681 cgtttctctt taaggttctc aggtataaag ggactggcaa aataaataag aatgatgctc
     1741 ta
//
