LOCUS       NM_001017362            1841 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus AT-rich interaction domain 3C (Arid3c), transcript
            variant 1, mRNA.
ACCESSION   NM_001017362
VERSION     NM_001017362.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Renaux,E., Baudouin,C., Schakman,O., Gay,O., Martin,M.,
            Marchese,D., Achouri,Y., Rezsohazy,R., Gofflot,F. and Clotman,F.
  TITLE     Arid3c identifies an uncharacterized subpopulation of V2
            interneurons during embryonic spinal cord development
  JOURNAL   Front Cell Neurosci 18, 1466056 (2024)
   PUBMED   39479525
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Tidwell,J.A., Schmidt,C., Heaton,P., Wilson,V. and Tucker,P.W.
  TITLE     Characterization of a new ARID family transcription factor
            (Brightlike/ARID3C) that co-activates Bright/ARID3A-mediated
            immunoglobulin gene transcription
  JOURNAL   Mol Immunol 49 (1-2), 260-272 (2011)
   PUBMED   21955986
  REMARK    GeneRIF: this report introduces Brightlike as an additional
            functional member of the family of ARID proteins, which should be
            considered in regulatory circuits, previously ascribed to be
            mediated by Bright.[ARID3C]
REFERENCE   3  (bases 1 to 1841)
  AUTHORS   Wilsker,D., Probst,L., Wain,H.M., Maltais,L., Tucker,P.W. and
            Moran,E.
  TITLE     Nomenclature of the ARID family of DNA-binding proteins
  JOURNAL   Genomics 86 (2), 242-251 (2005)
   PUBMED   15922553
REFERENCE   4  (bases 1 to 1841)
  AUTHORS   Wilsker,D., Patsialou,A., Dallas,P.B. and Moran,E.
  TITLE     ARID proteins: a diverse family of DNA binding proteins implicated
            in the control of cell growth, differentiation, and development
  JOURNAL   Cell Growth Differ 13 (3), 95-106 (2002)
   PUBMED   11959810
  REMARK    Review article
REFERENCE   5  (bases 1 to 1841)
  AUTHORS   Kortschak,R.D., Tucker,P.W. and Saint,R.
  TITLE     ARID proteins come in from the desert
  JOURNAL   Trends Biochem Sci 25 (6), 294-299 (2000)
   PUBMED   10838570
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL807796.17.
            
            On Sep 8, 2022 this sequence version replaced NM_001017362.2.
            
            Summary: This gene is a member of the ARID (AT-rich interaction
            domain) family of proteins. The ARID domain is a helix-turn-helix
            motif-based DNA-binding domain. ARID family members have roles in
            embryonic patterning, cell lineage gene regulation, cell cycle
            control, transcriptional regulation and possibly in chromatin
            structure modification. [provided by RefSeq, Jul 2008].
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164138,
                              SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               AL807796.17        87677-87812         c
            137-517             AL807796.17        86471-86851         c
            518-590             AL807796.17        84640-84712         c
            591-774             AL807796.17        82735-82918         c
            775-1064            AL807796.17        82332-82621         c
            1065-1247           AL807796.17        81593-81775         c
            1248-1337           AL807796.17        81291-81380         c
            1338-1841           AL807796.17        80416-80919         c
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 22.01 cM"
     gene            1..1841
                     /gene="Arid3c"
                     /note="AT-rich interaction domain 3C"
                     /db_xref="GeneID:550619"
                     /db_xref="MGI:MGI:3650624"
     exon            1..136
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            137..517
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            518..590
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            591..774
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            775..1064
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1247
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            1248..1337
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..1841
                     /gene="Arid3c"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1818..1823
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arid3c"
                     /note="hexamer: AATAAA"
     polyA_site      1841
                     /gene="Arid3c"
                     /note="major polyA site"
ORIGIN      
        1 agaagagcgc agggcggcaa gagcgcacag cggggaccct gcgcagggaa tccagctgag
       61 acaggagccg cccgaaaggc ggcagagcag acggaccgcc gtggagacac ccggggcttc
      121 gggcggtgcc aggcagccgg ccctttcctc ggggccccgc ctggtaccag gagccccccc
      181 agcaggggga ctgcgcctgg aagctgtaat ggaggccctg cagaggcagc aggcagcacg
      241 gctggcccaa ggggtggggc ccttggcccc tccacgctta ccgcttccac aacctcctct
      301 gcttggcgcc cggaccctac aggctcctga gggggctata ggggtggttg gggctgaaga
      361 agaggagggt gctgaagatg aggagggaga gacaccctta gcagaagagg agacagctga
      421 gcagagccat ccaggagccc gatgtcccaa ctcaccttcc agccagtctc ctggaatcca
      481 accacatgag tggacctacg aggaacagtt caagcagctg tatgaactcg atgcggaccc
      541 caagaggaag gagtttctgg atgacctatt tagcttcatg cagaagaggg gtacgccagt
      601 gaaccgggta cccatcatgg ccaaacaggt gctggatctg tatgcgttgt ttcgcttggt
      661 gacagccaag ggaggcctgg tggaagtcat caaccgaaaa gtgtggcgag aagtcacacg
      721 cggcctcagt ttgcccacca ccatcacctc tgccgccttc acgctccgta cacagtacat
      781 gaagtatttg tacccatacg agtgcgagac acgggcactc agttccccag gggagcttca
      841 ggctgccata gacagcaaca ggcgtgaggg ccgccgccag gcttacaccg cggtcccgct
      901 cttcaactta gcagggccca cacctcgggg cgctcctggc cccgcctcga gtcatgggcc
      961 cgccccgacc gcgaccccga actgcccggg tcccacccag ggttctgctt ctggtttacc
     1021 agcgcacgct tgcgctcaac tgagcccgag cccagtaaag aaagaggaga gtggaatccc
     1081 accccctcgt ctggcgctac ctatgggctt ggcctcggaa gctacaaggg agaagctggc
     1141 accggaagaa cctccggaga agagggctgt gctaatgggc cccgtggact cacctcgact
     1201 gggggcaccc cccagtttcc tgccccgtgg caaggctccc ctaagggaag agcggttgga
     1261 tgggcccctc aatctggcag gcagtggcat cagcagtatc aacgtggcac tagagatcaa
     1321 tggggtggtc tacactggta tcctctttgc tcgacgccaa cctgtgccag cttccttggg
     1381 tccaaccaat cctccacctc taccctctac agggccccct tccagtacct tgccctgaaa
     1441 gcagctactg agaaccaaga gtcccaatat cattgcttag ggggggagaa ggcaccctcc
     1501 taccttgatt ctttcaggat gtgacgccca ctctgggatc cagtcctggt tgatgtcagc
     1561 atgccacctc cacaccaaag ggatttatat tacgttccat ctacctcacc gtaaaaggca
     1621 gacactgtct ccctagctaa tttcagcagc atctaccaaa gagctttccc ccgagaaccc
     1681 ctatcactcc gtcatgtaac ccctatgtca gtgtcacctt tggtacccca cctctttgag
     1741 tcaattctgc tccttttcag gaagcaggtg aaggattgga tttgaatgtg aagatgtccc
     1801 ttgggttgca tctggaaaat aaaattgtac ttcccgtgtc t
//
