LOCUS       NM_001379353            4039 bp    mRNA    linear   ROD 26-NOV-2024
DEFINITION  Mus musculus AT-rich interaction domain 3B (Arid3b), transcript
            variant 1, mRNA.
ACCESSION   NM_001379353 XM_006511291
VERSION     NM_001379353.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4039)
  AUTHORS   Renaux,E., Baudouin,C., Schakman,O., Gay,O., Martin,M.,
            Marchese,D., Achouri,Y., Rezsohazy,R., Gofflot,F. and Clotman,F.
  TITLE     Arid3c identifies an uncharacterized subpopulation of V2
            interneurons during embryonic spinal cord development
  JOURNAL   Front Cell Neurosci 18, 1466056 (2024)
   PUBMED   39479525
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4039)
  AUTHORS   Zhang,C., Li,Y., Cao,J., Yu,B., Zhang,K., Li,K., Xu,X., Guo,Z.,
            Liang,Y., Yang,X., Yang,Z., Sun,Y., Kaartinen,V., Ding,K. and
            Wang,J.
  TITLE     Hedgehog signalling controls sinoatrial node development and
            atrioventricular cushion formation
  JOURNAL   Open Biol 11 (6), 210020 (2021)
   PUBMED   34062094
REFERENCE   3  (bases 1 to 4039)
  AUTHORS   Uribe,V., Badia-Careaga,C., Casanova,J.C., Dominguez,J.N., de la
            Pompa,J.L. and Sanz-Ezquerro,J.J.
  TITLE     Arid3b is essential for second heart field cell deployment and
            heart patterning
  JOURNAL   Development 141 (21), 4168-4181 (2014)
   PUBMED   25336743
REFERENCE   4  (bases 1 to 4039)
  AUTHORS   Samyesudhas,S.J., Roy,L. and Cowden Dahl,K.D.
  TITLE     Differential expression of ARID3B in normal adult tissue and
            carcinomas
  JOURNAL   Gene 543 (1), 174-180 (2014)
   PUBMED   24704276
  REMARK    GeneRIF: The different patterns of ARID3B in normal tissues
            translate into different roles for ARID3B in carcinomas.
REFERENCE   5  (bases 1 to 4039)
  AUTHORS   Gurtan,A.M., Ravi,A., Rahl,P.B., Bosson,A.D., JnBaptiste,C.K.,
            Bhutkar,A., Whittaker,C.A., Young,R.A. and Sharp,P.A.
  TITLE     Let-7 represses Nr6a1 and a mid-gestation developmental program in
            adult fibroblasts
  JOURNAL   Genes Dev 27 (8), 941-954 (2013)
   PUBMED   23630078
REFERENCE   6  (bases 1 to 4039)
  AUTHORS   Yoshikawa,T., Piao,Y., Zhong,J., Matoba,R., Carter,M.G., Wang,Y.,
            Goldberg,I. and Ko,M.S.
  TITLE     High-throughput screen for genes predominantly expressed in the ICM
            of mouse blastocysts by whole mount in situ hybridization
  JOURNAL   Gene Expr Patterns 6 (2), 213-224 (2006)
   PUBMED   16325481
REFERENCE   7  (bases 1 to 4039)
  AUTHORS   Wilsker,D., Probst,L., Wain,H.M., Maltais,L., Tucker,P.W. and
            Moran,E.
  TITLE     Nomenclature of the ARID family of DNA-binding proteins
  JOURNAL   Genomics 86 (2), 242-251 (2005)
   PUBMED   15922553
REFERENCE   8  (bases 1 to 4039)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 4039)
  AUTHORS   Kortschak,R.D., Tucker,P.W. and Saint,R.
  TITLE     ARID proteins come in from the desert
  JOURNAL   Trends Biochem Sci 25 (6), 294-299 (2000)
   PUBMED   10838570
  REMARK    Review article
REFERENCE   10 (bases 1 to 4039)
  AUTHORS   Herrscher,R.F., Kaplan,M.H., Lelsz,D.L., Das,C., Scheuermann,R. and
            Tucker,P.W.
  TITLE     The immunoglobulin heavy-chain matrix-associating regions are bound
            by Bright: a B cell-specific trans-activator that describes a new
            DNA-binding protein family
  JOURNAL   Genes Dev 9 (24), 3067-3082 (1995)
   PUBMED   8543152
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122534.5.
            
            On Mar 31, 2020 this sequence version replaced XM_006511291.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219381.16658.1,
                                           SRR17784648.909433.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                AC122534.5         81079-81176         c
            99-715              AC122534.5         78013-78629         c
            716-787             AC122534.5         54806-54877         c
            788-860             AC122534.5         54562-54634         c
            861-1044            AC122534.5         42439-42622         c
            1045-1361           AC122534.5         40869-41185         c
            1362-1607           AC122534.5         40504-40749         c
            1608-1706           AC122534.5         39333-39431         c
            1707-4039           AC122534.5         34750-37082         c
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 31.56 cM"
     gene            1..4039
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /note="AT-rich interaction domain 3B"
                     /db_xref="GeneID:56380"
                     /db_xref="MGI:MGI:1930768"
     exon            1..98
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            99..715
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     CDS             170..1876
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /note="isoform 1 is encoded by transcript variant 1; AT
                     rich interactive domain 3B (Bright like); AT-rich
                     interactive domain-containing protein 3B; bright-like
                     protein; bright and dead ringer protein; ARID
                     domain-containing protein 3B; bright and dead ringer gene
                     product homologous protein Bdp; dead ringer homolog 2; AT
                     rich interactive domain 3B (BRIGHT-like)"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein 3B
                     isoform 1"
                     /protein_id="NP_001366282.1"
                     /db_xref="GeneID:56380"
                     /db_xref="MGI:MGI:1930768"
                     /translation="MEPLQQQQQQQQQKQPQQPLLQMDAREKQGPQTRESQFLYASKL
                     GTQPALLSITPGRPSGSSVLGPLARVPPATPVARMSEQSNVNSEPEEEEGGLEDEDGD
                     DDVAEVAEKEAQAASKYFHMQKVTRQEPRATPMSSLLPVPGLSPQGQQTKEDHTKDAS
                     KAPPSVPTAGQPSWSLDEQLKQNGALAWSDDADGGRGREISRDFAKLYELDGDPERKE
                     FLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGL
                     NLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYSSSLF
                     GYSPAAAAAAAAAAAAAAASAASAGTPALLSSPKIRFSILGLGSSSGTSASSPRIPPA
                     STLRKGDGVPVPVPNRLAVSGTLAGQQAGNRPGPLEHLRERLESGEPPEKKASRLSEE
                     EQRLVQQAFQRNLFSMARQLPMKIRINGREDRAEPSAPALNLTTSNIGSINMSVDIDG
                     TTYTGVLFAQKPVVHLIAGSTPQSIGSSASSSNSSSSHCSPSPTSSRGTPSAEPSTSW
                     SL"
     exon            716..787
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            788..860
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            861..1044
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1361
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1607
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1706
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..4039
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4015..4020
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /note="hexamer: AATAAA"
     polyA_site      4039
                     /gene="Arid3b"
                     /gene_synonym="Bdp; Dri2"
                     /note="major polyA site"
ORIGIN      
        1 gtggccccca gctgcggagg agtagcaggc tcagctgcta cgctggggtc tgagcggctg
       61 cctcctccct acccgcgagc ccggaacgct gcacatagac ccagtgtgcc tgctgggctg
      121 tgcccaggtt gagagccatg ccagtctgtg ggtgaagcct gagacagtaa tggagcctct
      181 gcagcagcag cagcagcagc agcagcagaa gcagccacag cagcctctgc tacagatgga
      241 tgccagagag aagcagggac cacagacgag agaatcacag ttcctgtatg cctcaaaact
      301 aggcacgcag cctgctctcc tttccatcac acccgggaga ccttctggta gttctgttct
      361 gggtccctta gccagagttc caccagccac accggtggct cgaatgtctg agcagagcaa
      421 cgtgaactcc gagcctgagg aggaggaagg aggcctggaa gatgaagatg gagatgatga
      481 tgttgcagag gtggctgaaa aagaggccca ggctgcttcc aaatatttcc acatgcaaaa
      541 agtaactcgc caagaaccca gagcaacacc catgtccagc ctgcttccag tacccggact
      601 ttcaccacag ggacaacaaa ctaaagaaga ccataccaaa gatgcttcca aggccccgcc
      661 ctctgtgccc acagctggac agccgagctg gagtctggat gagcagctta agcagaatgg
      721 tgctttggcc tggagtgacg atgctgatgg aggcagggga agagagatct ctcgagattt
      781 tgccaagctg tatgaactag acggtgatcc tgaaaggaaa gaatttctgg atgacctctt
      841 catcttcatg cagaagagag gcaccccaat caaccggatt cccatcatgg ccaagcagat
      901 cctggacctg tacatgctgt ataaactggt cacagagaaa ggaggcctgg tggagatcat
      961 caacaagaaa atctggaggg agatcaccaa aggcctgaac ctgcccacct ccatcaccag
     1021 cgctgccttc accctcagga ctcagtacat gaagtatcta tatgcctatg agtgtgagaa
     1081 gaaagccttg agctccccag ctgaactaca ggcagccatc gatggcaacc gtagggaagg
     1141 tcggaggccc agctacagct cctcgctctt tggctattct cctgctgccg ccgctgctgc
     1201 tgctgctgcc gccgccgccg ctgctgctag tgctgcctct gctgggaccc ccgcccttct
     1261 ctcgtccccc aagatccgct tctccatcct tgggcttggc tccagcagtg gcaccagtgc
     1321 cagcagccct cggatacccc cggcatctac tctcaggaaa ggtgatggag tcccagtgcc
     1381 tgtgccaaat cgcctggctg tgtcagggac tttggcaggc cagcaggctg gcaaccggcc
     1441 tggcccactg gagcacctaa gggagcgcct ggaatcaggg gagccccctg agaagaaggc
     1501 atcaaggttg tcagaggagg agcaacgcct ggtgcagcag gccttccagc gcaacctctt
     1561 cagcatggcg cgacagctcc ccatgaagat cagaatcaac ggcagggaag acagagcaga
     1621 gccttcagct ccagcactga acctgaccac aagcaacatt gggagcatca atatgtctgt
     1681 ggatattgat ggtaccacct atacaggtgt gctgtttgcc cagaaaccag tggtccacct
     1741 cattgcgggc tctactcccc agagcattgg cagcagcgcc agcagcagca acagcagcag
     1801 ctctcactgc tcaccaagtc ctacctcatc ccggggtacc cccagtgcag agccctccac
     1861 cagctggtcc ctctgatgag cagcactcag cacccactcc ctactctcct gccaagatta
     1921 aaggagattg atgcacagaa tttacctcac ctcatggagc ccacaacaga caccatctgg
     1981 ccagatgtta aatttggaag agtccgtctg gccaagctcc attcaggttc tgctgtattc
     2041 tagggggcag gacagagtag cgttgtccaa tcagggattg tcttggagaa ctgggtgggg
     2101 catctgggca tccagctttc ccagggttcc ccaaccacct cccaacccag agtagtatat
     2161 cgacaatctg taaggcgact tggggctgga ggcttttcac ttcccttccc ccttaattta
     2221 tttcccttct gctgccttct gccttcaccc caggatcacc agacttttag tctgcccagt
     2281 cccccagtgt ttaaatccca tttggggctc taggagtcag gagcttgtct tccttgctct
     2341 tgttggctga gcatggggtg aggatgagtc tgcccgggcc tcctttagtc tccaggagtg
     2401 gatctcccat atccaagtct taaattcatt cctcagggcc ctggaatact tttgttgttg
     2461 ttgttgttcc taagaaaaaa gcatgttagg gcaggctttg ggttcagggt ccctctgtat
     2521 agagaggaag aagcactcac ggtgcccagg ccctgatacc tacccaacaa gactcccttc
     2581 tgatcctcaa accttggctt cctgcctgcc tatgttggcc aactctccca agataccact
     2641 ggtccctggt ccctaacgtc gtctcgtggg gccatctcag ccctaccagc ccaagacatg
     2701 gtgatgtcag gctcactgaa atacctcaga tttgtaattg ttgatatttg attcttcagg
     2761 aagtatttgc atctctgtaa tattttttta atatgtgttt tgctgacttt aatttttaaa
     2821 tttttattgt tgctgttgta gcaccaaaga aatgaaagca gatcacccca gccaggtgca
     2881 gtttgcagcc acctccctcc accctgccca tgccctggcc agggggtgta gcaggtgggg
     2941 tgactcaggg atcatcacag caggaggatg gggtggaggg acccctgctt gctggtggct
     3001 cctgaaacca cactggttct ttccaccgcc cctaccccag ctgtcagggt agggcagagg
     3061 atctttctgc ctttagcacc ctcaccttgg ggcagaggca aatggctatg ggccctgcct
     3121 gaggctgagc ttcaggaaca agaggatgct aagagctctg tcttctgttg gcatgcagct
     3181 ggaacaggcc actgtggtag agaaagggta gaccttatcc agggctccat tctcatcgca
     3241 gtgtgcctca ctctgttaca taaagcatca tcacccagac ccaccaggac tactctggct
     3301 gtagcagtgg agaccacagc atggcccagc agtcctgtcc taggacaaga aagggaaaag
     3361 cttatgcaca aacatacctc agcctggcga gcacagcact gctgacttgg tcttatccct
     3421 gccccaggac acacacactc agtaacacgc acacagccct tacactgggg tctgaccctc
     3481 ttctgcctca taagccctat ccacgaggca catgcagggt tgggcaaggg gtctggtgct
     3541 atgagaagcc tgtttggcca gtgtgtctca ggatttagtc ataaaggata gacccttcct
     3601 acccaggggt gacagggaca gtgctgcaag acttttcagt catcaaatac tctttcctca
     3661 ggcagcttgt tcccctgtcc ctctcaatgc ccctcactgc cctcaagcca gcagcaggct
     3721 cctagccaga aaatgcaaga gctgggtgcc ttgtgtgccc agcactaggg ctttggccca
     3781 agtggcgctt cccccgcagg tatagtcctg aaggccacgt ggccatgtgg ttggccagga
     3841 cagcctcctc cccttctgtg tcttgtatgt attctaacca gaaaaaaaaa aaaaaatgtg
     3901 atagcacatg gtagcctagg ccgtgactga atacctcaga tttcctctca cagcaagtgt
     3961 ctgtctgtgt cgtggttatc ttctgtctta catgttcttg aatgtttata tttcaataaa
     4021 gctctacctc ttcacatga
//
